RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CLSTN3Q9BQT9 956 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 HERC2P3Q9BVR0 1158 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 SSU72Q9NP77 194 aaKnown RBP17.26■□□□□ 0.35
LDLR-206ENST00000557958 MRPL17Q9NRX2 175 aaKnown RBP17.26■□□□□ 0.35
LDLR-206ENST00000557958 OSER1Q9NX31 292 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 RSPH14Q9UHP6 348 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 SNX10Q9Y5X0 201 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 PTPRSQ13332 1948 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 WDR27A2RRH5 827 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 SDR42E2A6NKP2 422 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 AP3B1O00203 1094 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 CCNCP24863 283 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 CCT5P48643 541 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 SEC24CP53992 1094 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 TAF10Q12962 218 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 PRPSAP1Q14558 356 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 TRIP4Q15650 581 aaPredicted RBP17.25■□□□□ 0.35
LDLR-206ENST00000557958 LGSNQ5TDP6 509 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 NUGGCQ68CJ6 796 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 ZNF534Q76KX8 674 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 PDCD7Q8N8D1 485 aaKnown RBP17.25■□□□□ 0.35
LDLR-206ENST00000557958 GSDMBQ8TAX9 411 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 SLC39A13Q96H72 371 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 BTN2A3PQ96KV6 586 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 TSGA13Q96PP4 275 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 NSRP1Q9H0G5 558 aaKnown RBP17.25■□□□□ 0.35
LDLR-206ENST00000557958 GBA3Q9H227 469 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 CRISPLD1Q9H336 500 aa17.25■□□□□ 0.35
LDLR-206ENST00000557958 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.25■□□□□ 0.35
LDLR-206ENST00000557958 E9PAM4 449 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 PRPF4O43172 522 aaKnown RBP eCLIP17.24■□□□□ 0.356e-9■■□□□ 13.2
LDLR-206ENST00000557958 PGFP49763 221 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 TUBP50607 506 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 MLLT6P55198 1093 aaPredicted RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 EFEMP1Q12805 493 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 TEX44Q53QW1 395 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 C10orf120Q5SQS8 335 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 TIGD7Q6NT04 549 aaPredicted RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 MICALCLQ6ZW33 695 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 TMC7Q7Z402 723 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 CPLX4Q7Z7G2 160 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 LRRC6Q86X45 466 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 PDZD8Q8NEN9 1154 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 GIPC2Q8TF65 315 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 ZNF473Q8WTR7 871 aaKnown RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 SLC44A1Q8WWI5 657 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 ALKBH8Q96BT7 664 aaKnown RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 MRRFQ96E11 262 aaKnown RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 STAMBPL1Q96FJ0 436 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 SIGLEC10Q96LC7 697 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 PRMT1Q99873 361 aaKnown RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 C17orf80Q9BSJ5 609 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 RABEP2Q9H5N1 569 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 MARCH2Q9P0N8 246 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 HSFX1Q9UBD0 423 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 NUDT5Q9UKK9 219 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 NEU3Q9UQ49 428 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 HS3ST4Q9Y661 456 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 DFFAO00273 331 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 PSMD3O43242 534 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 LINC00271P0C7V0 271 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 PRKCHP24723 683 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 BMPR1AP36894 532 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 PPARDQ03181 441 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 KBTBD12Q3ZCT8 623 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 CYS1Q717R9 158 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 SPRED2Q7Z698 418 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 TAX1BP1Q86VP1 789 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 SLC26A11Q86WA9 606 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 RTL3Q8N8U3 475 aaKnown RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 ANKRD42Q8N9B4 389 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 NETO2Q8NC67 525 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 CLP1Q92989 425 aaKnown RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 CEP41Q9BYV8 373 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 UBE2OQ9C0C9 1292 aaKnown RBP17.24■□□□□ 0.35
LDLR-206ENST00000557958 FAM107BQ9H098 131 aa17.24■□□□□ 0.35
LDLR-206ENST00000557958 LINC01553A4QN01 128 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 WASH4PA8MWX3 477 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 CXCL14O95715 111 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 AP2A1O95782 977 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 RING1Q06587 406 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 EFTUD2Q15029 972 aaKnown RBP eCLIP17.23■□□□□ 0.356e-13■■□□□ 12
LDLR-206ENST00000557958 CASC4Q6P4E1 433 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 TP53INP2Q8IXH6 220 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 MICAL1Q8TDZ2 1067 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 DCAKDQ8WVC6 231 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 OVCA2Q8WZ82 227 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 CELF6Q96J87 481 aaKnown RBP17.23■□□□□ 0.35
LDLR-206ENST00000557958 TTLL2Q9BWV7 592 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 SAMD15Q9P1V8 674 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 PPARGC1AQ9UBK2 798 aaKnown RBP17.23■□□□□ 0.35
LDLR-206ENST00000557958 ZNF180Q9UJW8 692 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 TTLL3Q9Y4R7 772 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 PCDHA11Q9Y5I1 949 aa17.23■□□□□ 0.35
LDLR-206ENST00000557958 SLC38A8A6NNN8 435 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 KRT37O76014 449 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 SUN1O94901 812 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 VNN2O95498 520 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 SPATA31D3P0C874 917 aa17.22■□□□□ 0.35
LDLR-206ENST00000557958 PGAM1P18669 254 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms