RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 CFAP57Q96MR6 1250 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 BPIFA3Q9BQP9 254 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 NUP58Q9BVL2 599 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 GTPBP2Q9BX10 602 aaKnown RBP10.48□□□□□ -0.73
SF3A3-204ENST00000462258 SIK2Q9H0K1 926 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 RSPH9Q9H1X1 276 aaPredicted RBP10.48□□□□□ -0.73
SF3A3-204ENST00000462258 WDCPQ9H6R7 721 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 CAPN10Q9HC96 672 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 ANLNQ9NQW6 1124 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 TMEM59LQ9UK28 342 aa10.48□□□□□ -0.73
SF3A3-204ENST00000462258 TMEM131Q92545 1883 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 TARSL2A2RTX5 802 aaKnown RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 TTC34A8MYJ7 566 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 I6L893 689 aaPredicted RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 RNASEH1O60930 286 aaKnown RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 CLDN11O75508 207 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SEMA4FO95754 770 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 F9P00740 461 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 GNSP15586 552 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 MAOBP27338 520 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 ACSL1P33121 698 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 NSFP46459 744 aaKnown RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 CDH4P55283 916 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SULT2A1Q06520 285 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 ZNF177Q13360 481 aaPredicted RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 ARID5BQ14865 1188 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 UAP1L1Q3KQV9 507 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 C5orf22Q49AR2 442 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 PSAPL1Q6NUJ1 521 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 ARCQ7LC44 396 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 BNIPLQ7Z465 357 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 FAM131BQ86XD5 332 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SLC30A5Q8TAD4 765 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SNX19Q92543 992 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 RPL10LQ96L21 214 aaKnown RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 BTBD1Q9H0C5 482 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 MIR1-1HGQ9H1L0 117 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 PCED1AQ9H1Q7 454 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 PABPC3Q9H361 631 aaKnown RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 C6orf106Q9H6K1 298 aaPredicted RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SEPT11Q9NVA2 429 aaKnown RBP10.47□□□□□ -0.73
SF3A3-204ENST00000462258 TMEM51Q9NW97 253 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SLC25A13Q9UJS0 675 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 VPS28Q9UK41 221 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SCML1Q9UN30 329 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 SNX10Q9Y5X0 201 aa10.47□□□□□ -0.73
SF3A3-204ENST00000462258 A0A1B0GTW7 788 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 LRRC10BA6NIK2 292 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 METTL12A8MUP2 240 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 ARHGAP33O14559 1287 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 MID1O15344 667 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 CNTN5O94779 1100 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 KCNK5O95279 499 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 RHOCP08134 193 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 SYPP08247 313 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 UNGP13051 313 aaPredicted RBP10.46□□□□□ -0.73
SF3A3-204ENST00000462258 SDC4P31431 198 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 NNMTP40261 264 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 PSMD8P48556 350 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 NOVA1P51513 510 aaKnown RBP10.46□□□□□ -0.73
SF3A3-204ENST00000462258 PLK1P53350 603 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 GSCP56915 257 aaPredicted RBP10.46□□□□□ -0.73
SF3A3-204ENST00000462258 ATP11AP98196 1134 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 GRIK2Q13002 908 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 ELAVL3Q14576 367 aaKnown RBP10.46□□□□□ -0.73
SF3A3-204ENST00000462258 CST6Q15828 149 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 CDO1Q16878 200 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 CLEC16AQ2KHT3 1053 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 ALFQ53S48 1182 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 C9orf64Q5T6V5 341 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 ACBD5Q5T8D3 534 aaPredicted RBP10.46□□□□□ -0.73
SF3A3-204ENST00000462258 LRRC31Q6UY01 552 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 USP30Q70CQ3 517 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 PHLDB2Q86SQ0 1253 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 MMAAQ8IVH4 418 aaKnown RBP10.46□□□□□ -0.73
SF3A3-204ENST00000462258 ZNF683Q8IZ20 524 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 HDDC3Q8N4P3 179 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 MINDY1Q8N5J2 469 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 OR52K2Q8NGK3 314 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 GANCQ8TET4 914 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 DNASE2BQ8WZ79 361 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 PPP1R9BQ96SB3 815 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 PCDHB18PQ96TA0 734 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 MUC3BQ9H195 1237 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 SGK2Q9HBY8 427 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 TMPRSS4Q9NRS4 437 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 SERGEFQ9UGK8 458 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 SLCO3A1Q9UIG8 710 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 TBC1D30Q9Y2I9 924 aa10.46□□□□□ -0.73
SF3A3-204ENST00000462258 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.46□□□□□ -0.73
SF3A3-204ENST00000462258 CHD5Q8TDI0 1954 aa10.46□□□□□ -0.74
SF3A3-204ENST00000462258 A0A1W2PP55 124 aa10.45□□□□□ -0.74
SF3A3-204ENST00000462258 C2CD4BA6NLJ0 364 aa10.45□□□□□ -0.74
SF3A3-204ENST00000462258 SMTNL1A8MU46 457 aa10.45□□□□□ -0.74
SF3A3-204ENST00000462258 E9PAM4 449 aa10.45□□□□□ -0.74
SF3A3-204ENST00000462258 BCAT2O15382 392 aaPredicted RBP10.45□□□□□ -0.74
SF3A3-204ENST00000462258 OPHN1O60890 802 aa10.45□□□□□ -0.74
SF3A3-204ENST00000462258 RNASEH2AO75792 299 aaKnown RBP10.45□□□□□ -0.74
SF3A3-204ENST00000462258 GJB6O95452 261 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms