RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PMLP29590 882 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 FLT3P36888 993 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 SULT1E1P49888 294 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 NOVA1P51513 510 aaKnown RBP19.98■□□□□ 0.79
USP40-207ENST00000450940 IRAK1P51617 712 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 FMO1Q01740 532 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 CENPCQ03188 943 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 SYCP1Q15431 976 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 UAP1L1Q3KQV9 507 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 C2CD6Q53TS8 623 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 SH3PXD2AQ5TCZ1 1133 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 NAA35Q5VZE5 725 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 TRNP1Q6NT89 227 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 PSAPL1Q6NUJ1 521 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 FAM124AQ86V42 546 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 TBCBQ99426 244 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 FEM1AQ9BSK4 669 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 TKTL2Q9H0I9 626 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 PABPC3Q9H361 631 aaKnown RBP19.98■□□□□ 0.79
USP40-207ENST00000450940 NLRC4Q9NPP4 1024 aa19.98■□□□□ 0.79
USP40-207ENST00000450940 DNAAF2Q9NVR5 837 aaKnown RBP19.98■□□□□ 0.79
USP40-207ENST00000450940 ENDOD1O94919 500 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 PDGFRAP16234 1089 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 STAT1P42224 750 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 ATXN3P54252 364 aaPredicted RBP19.97■□□□□ 0.79
USP40-207ENST00000450940 CDH4P55283 916 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 DEUP1Q05D60 604 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 TTC31Q49AM3 519 aaPredicted RBP19.97■□□□□ 0.79
USP40-207ENST00000450940 ARTNQ5T4W7 220 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 TRIM72Q6ZMU5 477 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 SND1Q7KZF4 910 aaKnown RBP eCLIP19.97■□□□□ 0.79
USP40-207ENST00000450940 PIP4P1Q86T03 277 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 DHX40Q8IX18 779 aaKnown RBP19.97■□□□□ 0.79
USP40-207ENST00000450940 MINDY1Q8N5J2 469 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 OR52K2Q8NGK3 314 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 PTPRN2Q92932 1015 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 RPL10LQ96L21 214 aaKnown RBP19.97■□□□□ 0.79
USP40-207ENST00000450940 SPAG5Q96R06 1193 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 FAM129BQ96TA1 746 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 ZDHHC5Q9C0B5 715 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 BTBD1Q9H0C5 482 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 SIK2Q9H0K1 926 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 C6orf106Q9H6K1 298 aaPredicted RBP19.97■□□□□ 0.79
USP40-207ENST00000450940 SGK2Q9HBY8 427 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 TMEM63CQ9P1W3 806 aa19.97■□□□□ 0.79
USP40-207ENST00000450940 TPRP12270 2363 aaKnown RBP19.97■□□□□ 0.79
USP40-207ENST00000450940 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.96■□□□□ 0.79
USP40-207ENST00000450940 DRGXA6NNA5 263 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 C10orf142B7Z368 130 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 GIPC1O14908 333 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 RNASEH1O60930 286 aaKnown RBP19.96■□□□□ 0.79
USP40-207ENST00000450940 GJB3O75712 270 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 SEMA4FO95754 770 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 TYRO3Q06418 890 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 ZNF177Q13360 481 aaPredicted RBP19.96■□□□□ 0.79
USP40-207ENST00000450940 RNF219Q5W0B1 726 aaPredicted RBP19.96■□□□□ 0.79
USP40-207ENST00000450940 NEK11Q8NG66 645 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 FRS2Q8WU20 508 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 GTPBP2Q9BX10 602 aaKnown RBP19.96■□□□□ 0.79
USP40-207ENST00000450940 OSGEPQ9NPF4 335 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 ADAMTS1Q9UHI8 967 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 EIF2B4Q9UI10 523 aaKnown RBP19.96■□□□□ 0.79
USP40-207ENST00000450940 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.96■□□□□ 0.79
USP40-207ENST00000450940 ACACBO00763 2458 aa19.96■□□□□ 0.79
USP40-207ENST00000450940 IGLV3-10A0A075B6K4 115 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 GOLGA8SH3BPF8 625 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 BCAT2O15382 392 aaPredicted RBP19.95■□□□□ 0.78
USP40-207ENST00000450940 OPHN1O60890 802 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 UNGP13051 313 aaPredicted RBP19.95■□□□□ 0.78
USP40-207ENST00000450940 CDK11BP21127 795 aaKnown RBP19.95■□□□□ 0.78
USP40-207ENST00000450940 GGCXP38435 758 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 NNMTP40261 264 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 STK19P49842 368 aaPredicted RBP19.95■□□□□ 0.78
USP40-207ENST00000450940 SHC2P98077 582 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 UBXN1Q04323 297 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 SFSWAPQ12872 951 aaKnown RBP19.95■□□□□ 0.78
USP40-207ENST00000450940 PTP4A2Q12974 167 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 SLC14A1Q13336 389 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 CST6Q15828 149 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 ZCCHC9Q8N567 271 aaKnown RBP19.95■□□□□ 0.78
USP40-207ENST00000450940 HAPLN3Q96S86 360 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 BPIFA3Q9BQP9 254 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 NCKAP1Q9Y2A7 1128 aa19.95■□□□□ 0.78
USP40-207ENST00000450940 ATP9BO43861 1147 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 CNTN5O94779 1100 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 CD59P13987 128 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 GRIK2Q13002 908 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 ELAVL3Q14576 367 aaKnown RBP19.94■□□□□ 0.78
USP40-207ENST00000450940 ALFQ53S48 1182 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 MMAAQ8IVH4 418 aaKnown RBP19.94■□□□□ 0.78
USP40-207ENST00000450940 HDDC3Q8N4P3 179 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 BIRC7Q96CA5 298 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 CFAP57Q96MR6 1250 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 PCDHB18PQ96TA0 734 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 MIR1-1HGQ9H1L0 117 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 FBXL12Q9NXK8 326 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 FZD4Q9ULV1 537 aa19.94■□□□□ 0.78
USP40-207ENST00000450940 CHD8Q9HCK8 2581 aa19.93■□□□□ 0.78
USP40-207ENST00000450940 KNL1Q8NG31 2342 aa19.93■□□□□ 0.78
USP40-207ENST00000450940 MID1O15344 667 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms