RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SNX7Q9UNH6 387 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF806P0C7X5 589 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF37AP17032 561 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 FMR1NBQ8N0W7 255 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 PHF20Q9BVI0 1012 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ANGPT4Q9Y264 503 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 A0A087WZ62 844 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TMEM253P0C7T8 217 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 SRGNP10124 158 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ADSSP30520 456 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 EIF5AP63241 154 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TUBA3CQ13748 450 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TKFCQ3LXA3 575 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 NOL9Q5SY16 702 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 RBM43Q6ZSC3 357 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TDRPQ86YL5 185 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 A0A087X1B8 175 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 FAM172BPA6NC97 362 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TNK2Q07912 1038 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 GRPEL2Q8TAA5 225 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 GMIPQ9P107 970 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 VPS28Q9UK41 221 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TNFSF13BQ9Y275 285 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 FBXO21O94952 628 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 GNRH1P01148 92 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 S100A3P33764 101 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 USP46P62068 366 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 PPIL2Q13356 520 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 CYP2A13Q16696 494 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ZFP69Q49AA0 526 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ANKRD26P1Q6NSI1 321 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 OR5T3Q8NGG3 340 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 NUDT12Q9BQG2 462 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TMEM47Q9BQJ4 181 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 SCAF8Q9UPN6 1271 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 SAMD4AQ9UPU9 718 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 CHST10O43529 356 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 KLHL23Q8NBE8 558 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 MEMO1Q9Y316 297 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 POLRMTO00411 1230 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 CYP27B1O15528 508 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 THRBP10828 461 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 XIAPP98170 497 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 EMC1Q8N766 993 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 ZHX1-C8orf76Q96EF9 292 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 TRMT13Q9NUP7 481 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 PLCL2Q9UPR0 1127 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 ZBTB14O43829 449 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 CYB5AP00167 134 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 MBL2P11226 248 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 NR2C2P49116 596 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 MECP2P51608 486 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 PRKCEQ02156 737 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 GRHL2Q6ISB3 625 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 ACAD10Q6JQN1 1059 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 STK40Q8N2I9 435 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 FAIM2Q9BWQ8 316 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 NUP50Q9UKX7 468 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 MAFFQ9ULX9 164 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 EFR3BQ9Y2G0 817 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 HOXC12P31275 282 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 EPHB3P54753 998 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 TXNDC11Q6PKC3 985 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC26A11Q86WA9 606 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 TRNT1Q96Q11 434 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 DMTF1Q9Y222 760 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 CDK7P50613 346 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 PLCZ1Q86YW0 608 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 KCNS3Q9BQ31 491 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 PRRG4Q9BZD6 226 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 SERPINF2P08697 491 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 CSH1P0DML2 217 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 CSH2P0DML3 217 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 IDH2P48735 452 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 SULT1C3Q6IMI6 304 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 MILR1Q7Z6M3 343 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 FBXO36Q8NEA4 188 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 DENND6BQ8NEG7 585 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 PLEKHG4BQ96PX9 1271 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 WDR24Q96S15 920 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 MRTO4Q9UKD2 239 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 TNPO3Q9Y5L0 923 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 GTPBP1O00178 669 aaKnown RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 METTL18O95568 372 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 RAG1P15918 1043 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 SPANXN3Q5MJ09 141 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 HIPK1Q86Z02 1210 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 CPNE1Q99829 537 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 C7orf25Q9BPX7 421 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 TTLL2Q9BWV7 592 aa14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF335Q9H4Z2 1342 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-201ENST00000263630 MSH4O15457 936 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 IGFALSP35858 605 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 RAP1GAPP47736 663 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 CD302Q8IX05 232 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 LRRC34Q8IZ02 419 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 SPATA9Q9BWV2 254 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 MORF4L1Q9UBU8 362 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ANKARQ7Z5J8 1434 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 147.5 ms