RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 AVPP01185 164 aa12□□□□□ -0.49
VPS29-212ENST00000621131 CTHP32929 405 aa12□□□□□ -0.49
VPS29-212ENST00000621131 GNL3Q9BVP2 549 aaKnown RBP eCLIP12□□□□□ -0.49
VPS29-212ENST00000621131 SIAH2O43255 324 aa11.99□□□□□ -0.49
VPS29-212ENST00000621131 SMPD1P17405 629 aa11.99□□□□□ -0.49
VPS29-212ENST00000621131 TSC1Q92574 1164 aa11.99□□□□□ -0.49
VPS29-212ENST00000621131 J3QL48 77 aa11.98□□□□□ -0.49
VPS29-212ENST00000621131 MAP10Q9P2G4 905 aa11.98□□□□□ -0.49
VPS29-212ENST00000621131 NEUROD2Q15784 382 aa11.97□□□□□ -0.49
VPS29-212ENST00000621131 LINC01559Q495D7 138 aa11.97□□□□□ -0.49
VPS29-212ENST00000621131 AAASQ9NRG9 546 aa11.97□□□□□ -0.49
VPS29-212ENST00000621131 PPP2R2DQ66LE6 453 aa11.96□□□□□ -0.49
VPS29-212ENST00000621131 ZNF511Q8NB15 262 aa11.96□□□□□ -0.49
VPS29-212ENST00000621131 BRPF1P55201 1214 aaPredicted RBP11.95□□□□□ -0.5
VPS29-212ENST00000621131 CRIPAKQ8N1N5 446 aa11.95□□□□□ -0.5
VPS29-212ENST00000621131 EHBP1Q8NDI1 1231 aa11.95□□□□□ -0.5
VPS29-212ENST00000621131 HELBQ8NG08 1087 aaPredicted RBP11.95□□□□□ -0.5
VPS29-212ENST00000621131 ST8SIA5O15466 376 aa11.94□□□□□ -0.5
VPS29-212ENST00000621131 CTDSPL2Q05D32 466 aa11.94□□□□□ -0.5
VPS29-212ENST00000621131 SMCPP49901 116 aaPredicted RBP11.92□□□□□ -0.5
VPS29-212ENST00000621131 IL27Q8NEV9 243 aa11.92□□□□□ -0.5
VPS29-212ENST00000621131 GOPCQ9HD26 462 aa11.92□□□□□ -0.5
VPS29-212ENST00000621131 CTC1Q2NKJ3 1217 aa11.91□□□□□ -0.5
VPS29-212ENST00000621131 ZNF787Q6DD87 383 aa11.91□□□□□ -0.5
VPS29-212ENST00000621131 ALDH1A1P00352 501 aa11.9□□□□□ -0.5
VPS29-212ENST00000621131 VARSP26640 1264 aaKnown RBP11.9□□□□□ -0.5
VPS29-212ENST00000621131 HPS1Q92902 700 aa11.9□□□□□ -0.5
VPS29-212ENST00000621131 DACH1Q9UI36 760 aa11.9□□□□□ -0.5
VPS29-212ENST00000621131 ATP1B4Q9UN42 357 aaPredicted RBP11.9□□□□□ -0.5
VPS29-212ENST00000621131 FOXJ1Q92949 421 aa11.89□□□□□ -0.51
VPS29-212ENST00000621131 POTECB2RU33 542 aa11.88□□□□□ -0.51
VPS29-212ENST00000621131 AXIN1O15169 862 aa11.88□□□□□ -0.51
VPS29-212ENST00000621131 MPNDQ8N594 471 aa11.87□□□□□ -0.51
VPS29-212ENST00000621131 LRRN4Q8WUT4 740 aa11.87□□□□□ -0.51
VPS29-212ENST00000621131 ARMC2Q8NEN0 867 aa11.86□□□□□ -0.51
VPS29-212ENST00000621131 C4orf48Q5BLP8 95 aa11.85□□□□□ -0.51
VPS29-212ENST00000621131 PCMTD1Q96MG8 357 aaPredicted RBP11.84□□□□□ -0.51
VPS29-212ENST00000621131 AP1G2O75843 785 aa11.83□□□□□ -0.52
VPS29-212ENST00000621131 TLL2Q9Y6L7 1015 aa11.83□□□□□ -0.52
VPS29-212ENST00000621131 RFC5P40937 340 aa11.82□□□□□ -0.52
VPS29-212ENST00000621131 SH3RF1Q7Z6J0 888 aa11.82□□□□□ -0.52
VPS29-212ENST00000621131 BPHLQ86WA6 291 aaPredicted RBP11.82□□□□□ -0.52
VPS29-212ENST00000621131 FAM174AQ8TBP5 190 aa11.82□□□□□ -0.52
VPS29-212ENST00000621131 WASF2Q9Y6W5 498 aa11.82□□□□□ -0.52
VPS29-212ENST00000621131 CDK15Q96Q40 435 aa11.81□□□□□ -0.52
VPS29-212ENST00000621131 SH3BP5LQ7L8J4 393 aa11.8□□□□□ -0.52
VPS29-212ENST00000621131 AGERQ15109 404 aa11.79□□□□□ -0.52
VPS29-212ENST00000621131 NR6A1Q15406 480 aa11.79□□□□□ -0.52
VPS29-212ENST00000621131 NBPF14Q5TI25 921 aa11.79□□□□□ -0.52
VPS29-212ENST00000621131 GPKOWQ92917 476 aaPredicted RBP eCLIP11.79□□□□□ -0.52
VPS29-212ENST00000621131 PRKCSHP14314 528 aaPredicted RBP11.78□□□□□ -0.52
VPS29-212ENST00000621131 C1QTNF2Q9BXJ5 285 aa11.78□□□□□ -0.52
VPS29-212ENST00000621131 GMPR2Q9P2T1 348 aaKnown RBP11.78□□□□□ -0.52
VPS29-212ENST00000621131 ATP13A2Q9NQ11 1180 aa11.77□□□□□ -0.53
VPS29-212ENST00000621131 FKBPLQ9UIM3 349 aa11.77□□□□□ -0.53
VPS29-212ENST00000621131 USP17L8P0C7I0 530 aa11.76□□□□□ -0.53
VPS29-212ENST00000621131 PDXDC2PQ6P474 469 aa11.76□□□□□ -0.53
VPS29-212ENST00000621131 EPS8L1Q8TE68 723 aa11.76□□□□□ -0.53
VPS29-212ENST00000621131 HMX1Q9NP08 348 aaPredicted RBP11.76□□□□□ -0.53
VPS29-212ENST00000621131 GRM5P41594 1212 aa11.75□□□□□ -0.53
VPS29-212ENST00000621131 NNTQ13423 1086 aa11.75□□□□□ -0.53
VPS29-212ENST00000621131 TMEM259Q4ZIN3 620 aa11.75□□□□□ -0.53
VPS29-212ENST00000621131 ADH1CP00326 375 aa11.74□□□□□ -0.53
VPS29-212ENST00000621131 ARID5BQ14865 1188 aa11.74□□□□□ -0.53
VPS29-212ENST00000621131 ZNF775Q96BV0 537 aaPredicted RBP11.73□□□□□ -0.53
VPS29-212ENST00000621131 KLF16Q9BXK1 252 aaPredicted RBP11.73□□□□□ -0.53
VPS29-212ENST00000621131 ZC3H4Q9UPT8 1303 aaKnown RBP11.72□□□□□ -0.53
VPS29-212ENST00000621131 CAPN5O15484 640 aaPredicted RBP11.72□□□□□ -0.53
VPS29-212ENST00000621131 TRMT44Q8IYL2 757 aaKnown RBP11.72□□□□□ -0.53
VPS29-212ENST00000621131 MAGEB6P1A0A0J9YX57 407 aa11.71□□□□□ -0.53
VPS29-212ENST00000621131 NR5A1Q13285 461 aa11.71□□□□□ -0.53
VPS29-212ENST00000621131 C11orf95C9JLR9 678 aaPredicted RBP11.7□□□□□ -0.54
VPS29-212ENST00000621131 OCSTAMPQ9BR26 566 aa11.7□□□□□ -0.54
VPS29-212ENST00000621131 ERFEQ4G0M1 354 aa11.69□□□□□ -0.54
VPS29-212ENST00000621131 ARHGAP9Q9BRR9 750 aa11.69□□□□□ -0.54
VPS29-212ENST00000621131 TRIM34Q9BYJ4 488 aa11.69□□□□□ -0.54
VPS29-212ENST00000621131 MAP4K5Q9Y4K4 846 aa11.69□□□□□ -0.54
VPS29-212ENST00000621131 NR3C2P08235 984 aa11.68□□□□□ -0.54
VPS29-212ENST00000621131 TIMP2P16035 220 aa11.68□□□□□ -0.54
VPS29-212ENST00000621131 TRIM46Q7Z4K8 759 aa11.68□□□□□ -0.54
VPS29-212ENST00000621131 CARD14Q9BXL6 1004 aa11.68□□□□□ -0.54
VPS29-212ENST00000621131 WDR4P57081 412 aaKnown RBP11.67□□□□□ -0.54
VPS29-212ENST00000621131 SENP2Q9HC62 589 aa11.67□□□□□ -0.54
VPS29-212ENST00000621131 GPSM3Q9Y4H4 160 aa11.67□□□□□ -0.54
VPS29-212ENST00000621131 SNRPBP14678 240 aaKnown RBP11.66□□□□□ -0.54
VPS29-212ENST00000621131 PTK2Q05397 1052 aa11.66□□□□□ -0.54
VPS29-212ENST00000621131 TRIM47Q96LD4 638 aa11.66□□□□□ -0.54
VPS29-212ENST00000621131 VASH1Q7L8A9 365 aaPredicted RBP11.65□□□□□ -0.54
VPS29-212ENST00000621131 GJD4Q96KN9 370 aaPredicted RBP11.65□□□□□ -0.54
VPS29-212ENST00000621131 BMP1P13497 986 aa11.64□□□□□ -0.55
VPS29-212ENST00000621131 ZBTB33Q86T24 672 aa11.64□□□□□ -0.55
VPS29-212ENST00000621131 BANK1Q8NDB2 785 aa11.64□□□□□ -0.55
VPS29-212ENST00000621131 PNMA1Q8ND90 353 aa11.63□□□□□ -0.55
VPS29-212ENST00000621131 KIFC2Q96AC6 838 aa11.63□□□□□ -0.55
VPS29-212ENST00000621131 ITPKCQ96DU7 683 aa11.63□□□□□ -0.55
VPS29-212ENST00000621131 ZIC2O95409 532 aaPredicted RBP11.62□□□□□ -0.55
VPS29-212ENST00000621131 ADAM32Q8TC27 787 aa11.62□□□□□ -0.55
VPS29-212ENST00000621131 ZFAND3Q9H8U3 227 aa11.62□□□□□ -0.55
VPS29-212ENST00000621131 FSHRP23945 695 aa11.61□□□□□ -0.55
VPS29-212ENST00000621131 MRPL14Q6P1L8 145 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms