RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CDCA8Q53HL2 280 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 NOM1Q5C9Z4 860 aaKnown RBP7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 PHOX2BQ99453 314 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 IL21Q9HBE4 155 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 GPCPD1Q9NPB8 672 aa7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 PPP1R1BQ9UD71 204 aaPredicted RBP7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 GNEQ9Y223 722 aaKnown RBP7.52□□□□□ -1.2
VPS35P1-201ENST00000563400 CLK2P49760 499 aaKnown RBP7.52□□□□□ -1.21
VPS35P1-201ENST00000563400 APLP1P51693 650 aa7.52□□□□□ -1.21
VPS35P1-201ENST00000563400 PCDHB3Q9Y5E6 796 aa7.52□□□□□ -1.21
VPS35P1-201ENST00000563400 HMGXB3Q12766 1538 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 CFHP08603 1231 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 RDH13Q8NBN7 331 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 MTRQ99707 1265 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 PEG3Q9GZU2 1588 aa7.51□□□□□ -1.21
VPS35P1-201ENST00000563400 DDX11L8A8MPP1 907 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 TMEM259Q4ZIN3 620 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 ANKRD13AQ8IZ07 590 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 PPP1R12CQ9BZL4 782 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 BRPF3Q9ULD4 1205 aa7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 RSF1Q96T23 1441 aaPredicted RBP7.5□□□□□ -1.21
VPS35P1-201ENST00000563400 ACTN4O43707 911 aaKnown RBP7.49□□□□□ -1.21
VPS35P1-201ENST00000563400 SIRT1Q96EB6 747 aa7.49□□□□□ -1.21
VPS35P1-201ENST00000563400 A0A0G2JS52 829 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 RGS20O76081 388 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 LMOD1P29536 600 aaPredicted RBP7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 TJAP1Q5JTD0 557 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 ZNF592Q92610 1267 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 C8orf37Q96NL8 207 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 BCL2L13Q9BXK5 485 aa7.48□□□□□ -1.21
VPS35P1-201ENST00000563400 ANKRD62A6NC57 917 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 COPS2P61201 443 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 PALM3A6NDB9 673 aaPredicted RBP7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 SLC10A3P09131 477 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 GIPC2Q8TF65 315 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 FAM217BQ9NTX9 383 aaPredicted RBP7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 LIMD1Q9UGP4 676 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 MROH2BQ7Z745 1585 aa7.47□□□□□ -1.21
VPS35P1-201ENST00000563400 NR1I2O75469 434 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 NCLP19338 710 aaKnown RBP7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 GGCXP38435 758 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 GRIPAP1Q4V328 841 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 GIMAP6Q6P9H5 292 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 NLRP7Q8WX94 980 aa7.46□□□□□ -1.22
VPS35P1-201ENST00000563400 PPP2R2DQ66LE6 453 aa7.45□□□□□ -1.22
VPS35P1-201ENST00000563400 ZPR1O75312 459 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 ATG7O95352 703 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 TMED8Q6PL24 325 aaPredicted RBP7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 ZNF662Q6ZS27 426 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 UBXN4Q92575 508 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 HIRIP3Q9BW71 556 aaPredicted RBP7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 TBC1D2Q9BYX2 928 aa7.44□□□□□ -1.22
VPS35P1-201ENST00000563400 ZC3H4Q9UPT8 1303 aaKnown RBP7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 ZC3H6P61129 1189 aaKnown RBP7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 BLOC1S3Q6QNY0 202 aa7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 TFIP11Q9UBB9 837 aaKnown RBP7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 PDS5BQ9NTI5 1447 aa7.43□□□□□ -1.22
VPS35P1-201ENST00000563400 ERCC3P19447 782 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 ATP6V1AP38606 617 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 GCGRP47871 477 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 NAALADL2Q58DX5 795 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 ZNF516Q92618 1163 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 PSMD1Q99460 953 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 PRM3Q9NNZ6 103 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 PHLDB3Q6NSJ2 640 aa7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 CCER1Q8TC90 406 aaPredicted RBP7.42□□□□□ -1.22
VPS35P1-201ENST00000563400 MARCH6O60337 910 aa7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 NOL8Q76FK4 1167 aaKnown RBP7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 ZNF526Q8TF50 670 aaPredicted RBP7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 UCN2Q96RP3 112 aa7.41□□□□□ -1.22
VPS35P1-201ENST00000563400 TOP2AP11388 1531 aaKnown RBP7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 CD46P15529 392 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 USP46P62068 366 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 FUT2Q10981 343 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 TAF7LQ5H9L4 462 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 CC2D2BQ6DHV5 1058 aa7.4□□□□□ -1.22
VPS35P1-201ENST00000563400 VAC14Q08AM6 782 aa7.39□□□□□ -1.23
VPS35P1-201ENST00000563400 SCUBE3Q8IX30 993 aa7.39□□□□□ -1.23
VPS35P1-201ENST00000563400 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.39□□□□□ -1.23
VPS35P1-201ENST00000563400 AP1G2O75843 785 aa7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 TAGLNQ01995 201 aaKnown RBP7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 PUS10Q3MIT2 529 aaKnown RBP7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 PPP1R18Q6NYC8 613 aa7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 ERCC6Q03468 1493 aa7.38□□□□□ -1.23
VPS35P1-201ENST00000563400 SOCS7O14512 581 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 MORN1Q5T089 497 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 DPH6Q7L8W6 267 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 RIC3Q7Z5B4 369 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 NUTM1Q86Y26 1132 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 NKX2-3Q8TAU0 364 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 ALG2Q9H553 416 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 LAMC3Q9Y6N6 1575 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 ADH1BP00325 375 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 CSPP1Q1MSJ5 1256 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 Q3C1V9 767 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 B4GALNT3Q6L9W6 998 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 NPAS4Q8IUM7 802 aa7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 GJD4Q96KN9 370 aaPredicted RBP7.37□□□□□ -1.23
VPS35P1-201ENST00000563400 WIZO95785 1651 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms