RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 SLAIN2Q9P270 581 aa5.81□□□□□ -1.48
SKP1-209ENST00000522552 VPS9D1Q9Y2B5 631 aa5.81□□□□□ -1.48
SKP1-209ENST00000522552 NUTM2BA6NNL0 878 aaPredicted RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 NUTM2EB1AL46 878 aaPredicted RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 ATP9BO43861 1147 aa5.8□□□□□ -1.48
SKP1-209ENST00000522552 NDUFV2P19404 249 aa5.8□□□□□ -1.48
SKP1-209ENST00000522552 TAGLNQ01995 201 aaKnown RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 NUTM2DQ5VT03 806 aaPredicted RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 NOL8Q76FK4 1167 aaKnown RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 NUTM2AQ8IVF1 878 aaPredicted RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 BIN2Q9UBW5 565 aaPredicted RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 NOVA2Q9UNW9 492 aaKnown RBP5.8□□□□□ -1.48
SKP1-209ENST00000522552 MARCH6O60337 910 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 GJA5P36382 358 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 SEMA3FQ13275 785 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 PADI6Q6TGC4 694 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 FBXO33Q7Z6M2 555 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 ZNF592Q92610 1267 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 CD46P15529 392 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 TSNAXIP1Q2TAA8 658 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 CC2D2BQ6DHV5 1058 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 NUTM1Q86Y26 1132 aa5.79□□□□□ -1.48
SKP1-209ENST00000522552 IRX2Q9BZI1 471 aaPredicted RBP5.79□□□□□ -1.48
SKP1-209ENST00000522552 TK2O00142 265 aa5.78□□□□□ -1.48
SKP1-209ENST00000522552 ERCC5P28715 1186 aaPredicted RBP5.78□□□□□ -1.48
SKP1-209ENST00000522552 STAC3Q96MF2 364 aa5.78□□□□□ -1.48
SKP1-209ENST00000522552 PSMD1Q99460 953 aa5.78□□□□□ -1.48
SKP1-209ENST00000522552 CTDSPL2Q05D32 466 aa5.77□□□□□ -1.49
SKP1-209ENST00000522552 PRPF38BQ5VTL8 546 aaKnown RBP5.77□□□□□ -1.49
SKP1-209ENST00000522552 CDCA7LQ96GN5 454 aa5.77□□□□□ -1.49
SKP1-209ENST00000522552 KIAA1468Q9P260 1216 aa5.77□□□□□ -1.49
SKP1-209ENST00000522552 SEPT9Q9UHD8 586 aaPredicted RBP5.77□□□□□ -1.49
SKP1-209ENST00000522552 TSKSQ9UJT2 592 aa5.77□□□□□ -1.49
SKP1-209ENST00000522552 BRPF3Q9ULD4 1205 aa5.77□□□□□ -1.49
SKP1-209ENST00000522552 TRIM6-TRIM34B2RNG4 842 aa5.76□□□□□ -1.49
SKP1-209ENST00000522552 HRO43593 1189 aa5.76□□□□□ -1.49
SKP1-209ENST00000522552 FAM198AQ9UFP1 575 aa5.76□□□□□ -1.49
SKP1-209ENST00000522552 C3orf80F5H4A9 247 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 SMAPO00193 183 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 PRSS12P56730 875 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 PLA2G2EQ9NZK7 142 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 SCNN1AP37088 669 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 FAM69CQ0P6D2 419 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 NOP9Q86U38 636 aaKnown RBP5.75□□□□□ -1.49
SKP1-209ENST00000522552 MRPL50Q8N5N7 158 aaKnown RBP5.75□□□□□ -1.49
SKP1-209ENST00000522552 CERKQ8TCT0 537 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 MICAL1Q8TDZ2 1067 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 EPS8L1Q8TE68 723 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 LRRN4Q8WUT4 740 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 DNAJC2Q99543 621 aaKnown RBP5.75□□□□□ -1.49
SKP1-209ENST00000522552 SLC4A5Q9BY07 1137 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 ZBTB3Q9H5J0 574 aa5.75□□□□□ -1.49
SKP1-209ENST00000522552 BHMG1C9JSJ3 638 aaPredicted RBP5.74□□□□□ -1.49
SKP1-209ENST00000522552 TTC13Q8NBP0 860 aa5.74□□□□□ -1.49
SKP1-209ENST00000522552 RBM46Q8TBY0 533 aaKnown RBP5.74□□□□□ -1.49
SKP1-209ENST00000522552 CLP1Q92989 425 aaKnown RBP5.74□□□□□ -1.49
SKP1-209ENST00000522552 BACH2Q9BYV9 841 aa5.74□□□□□ -1.49
SKP1-209ENST00000522552 LNPKQ9C0E8 428 aa5.74□□□□□ -1.49
SKP1-209ENST00000522552 RABGEF1Q9UJ41 708 aa5.74□□□□□ -1.49
SKP1-209ENST00000522552 GOLGA8CPA6NN73 597 aa5.73□□□□□ -1.49
SKP1-209ENST00000522552 PIK3CDO00329 1044 aa5.73□□□□□ -1.49
SKP1-209ENST00000522552 RAB11FIP3O75154 756 aa5.73□□□□□ -1.49
SKP1-209ENST00000522552 HDLBPQ00341 1268 aaKnown RBP5.73□□□□□ -1.49
SKP1-209ENST00000522552 CRTC2Q53ET0 693 aaPredicted RBP5.73□□□□□ -1.49
SKP1-209ENST00000522552 C9orf131Q5VYM1 1079 aa5.73□□□□□ -1.49
SKP1-209ENST00000522552 PIK3R5Q8WYR1 880 aa5.73□□□□□ -1.49
SKP1-209ENST00000522552 KCTD12Q96CX2 325 aaKnown RBP5.73□□□□□ -1.49
SKP1-209ENST00000522552 TANGO6Q9C0B7 1094 aa5.73□□□□□ -1.49
SKP1-209ENST00000522552 NBPF3Q9H094 633 aa5.73□□□□□ -1.49
SKP1-209ENST00000522552 TMA7Q9Y2S6 64 aaKnown RBP5.73□□□□□ -1.49
SKP1-209ENST00000522552 USP17L3A6NCW0 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L4A6NCW7 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 FAM196BA6NMK8 535 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L15C9J2P7 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L10C9JJH3 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L13C9JLJ4 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L12C9JPN9 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L11C9JVI0 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L21D6R901 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L18D6R9N7 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L22D6RA61 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L17D6RBQ6 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L19D6RCP7 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L20D6RJB6 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 ATP2B4P23634 1241 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L24Q0WX57 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L2Q6R6M4 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 NUDT18Q6ZVK8 323 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 USP17L1Q7RTZ2 530 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 PACS2Q86VP3 889 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 PNMA3Q9UL41 463 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.72□□□□□ -1.49
SKP1-209ENST00000522552 SBNO2Q9Y2G9 1366 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 TMED8Q6PL24 325 aaPredicted RBP5.72□□□□□ -1.49
SKP1-209ENST00000522552 ZNF526Q8TF50 670 aaPredicted RBP5.72□□□□□ -1.49
SKP1-209ENST00000522552 CUEDC1Q9NWM3 386 aaPredicted RBP5.72□□□□□ -1.49
SKP1-209ENST00000522552 RIPOR2Q9Y4F9 1068 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 PPME1Q9Y570 386 aa5.72□□□□□ -1.49
SKP1-209ENST00000522552 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.72□□□□□ -1.49
SKP1-209ENST00000522552 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms