RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 POLR3EQ9NVU0 708 aa7.84□□□□□ -1.15
CPSF3-205ENST00000489629 PLEKHG3A1L390 1219 aa7.83□□□□□ -1.16
CPSF3-205ENST00000489629 NUTM2BA6NNL0 878 aaPredicted RBP7.83□□□□□ -1.16
CPSF3-205ENST00000489629 NUTM2EB1AL46 878 aaPredicted RBP7.83□□□□□ -1.16
CPSF3-205ENST00000489629 AXIN1O15169 862 aa7.83□□□□□ -1.16
CPSF3-205ENST00000489629 LINC01559Q495D7 138 aa7.83□□□□□ -1.16
CPSF3-205ENST00000489629 NUTM2DQ5VT03 806 aaPredicted RBP7.83□□□□□ -1.16
CPSF3-205ENST00000489629 NUTM2AQ8IVF1 878 aaPredicted RBP7.83□□□□□ -1.16
CPSF3-205ENST00000489629 ZNF511Q8NB15 262 aa7.83□□□□□ -1.16
CPSF3-205ENST00000489629 EHBP1Q8NDI1 1231 aa7.83□□□□□ -1.16
CPSF3-205ENST00000489629 HPS1Q92902 700 aa7.83□□□□□ -1.16
CPSF3-205ENST00000489629 MAP10Q9P2G4 905 aa7.83□□□□□ -1.16
CPSF3-205ENST00000489629 CTHP32929 405 aa7.82□□□□□ -1.16
CPSF3-205ENST00000489629 SKIV2LQ15477 1246 aaKnown RBP7.82□□□□□ -1.16
CPSF3-205ENST00000489629 FBXO31Q5XUX0 539 aaPredicted RBP7.82□□□□□ -1.16
CPSF3-205ENST00000489629 SH3D19Q5HYK7 790 aa7.81□□□□□ -1.16
CPSF3-205ENST00000489629 DDRGK1Q96HY6 314 aa7.81□□□□□ -1.16
CPSF3-205ENST00000489629 ALDH1A1P00352 501 aa7.8□□□□□ -1.16
CPSF3-205ENST00000489629 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.8□□□□□ -1.16
CPSF3-205ENST00000489629 VARSP26640 1264 aaKnown RBP7.79□□□□□ -1.16
CPSF3-205ENST00000489629 MPNDQ8N594 471 aa7.79□□□□□ -1.16
CPSF3-205ENST00000489629 PROCA1Q8NCQ7 364 aaPredicted RBP7.79□□□□□ -1.16
CPSF3-205ENST00000489629 TSC1Q92574 1164 aa7.79□□□□□ -1.16
CPSF3-205ENST00000489629 ZNF775Q96BV0 537 aaPredicted RBP7.79□□□□□ -1.16
CPSF3-205ENST00000489629 FOXJ1Q92949 421 aa7.78□□□□□ -1.16
CPSF3-205ENST00000489629 GMPR2Q9P2T1 348 aaKnown RBP7.78□□□□□ -1.16
CPSF3-205ENST00000489629 PPP2R2DQ66LE6 453 aa7.77□□□□□ -1.17
CPSF3-205ENST00000489629 HELBQ8NG08 1087 aaPredicted RBP7.77□□□□□ -1.17
CPSF3-205ENST00000489629 TLL2Q9Y6L7 1015 aa7.77□□□□□ -1.17
CPSF3-205ENST00000489629 CTDSPL2Q05D32 466 aa7.76□□□□□ -1.17
CPSF3-205ENST00000489629 C4orf48Q5BLP8 95 aa7.76□□□□□ -1.17
CPSF3-205ENST00000489629 ATP13A2Q9NQ11 1180 aa7.76□□□□□ -1.17
CPSF3-205ENST00000489629 WASF2Q9Y6W5 498 aa7.75□□□□□ -1.17
CPSF3-205ENST00000489629 CDK15Q96Q40 435 aa7.74□□□□□ -1.17
CPSF3-205ENST00000489629 SH3RF1Q7Z6J0 888 aa7.73□□□□□ -1.17
CPSF3-205ENST00000489629 ARMC2Q8NEN0 867 aa7.73□□□□□ -1.17
CPSF3-205ENST00000489629 FAM174AQ8TBP5 190 aa7.73□□□□□ -1.17
CPSF3-205ENST00000489629 SH3BP5LQ7L8J4 393 aa7.72□□□□□ -1.17
CPSF3-205ENST00000489629 BPHLQ86WA6 291 aaPredicted RBP7.72□□□□□ -1.17
CPSF3-205ENST00000489629 LRRN4Q8WUT4 740 aa7.72□□□□□ -1.17
CPSF3-205ENST00000489629 C1QTNF2Q9BXJ5 285 aa7.72□□□□□ -1.17
CPSF3-205ENST00000489629 C11orf95C9JLR9 678 aaPredicted RBP7.71□□□□□ -1.18
CPSF3-205ENST00000489629 NNTQ13423 1086 aa7.71□□□□□ -1.18
CPSF3-205ENST00000489629 GOPCQ9HD26 462 aa7.71□□□□□ -1.18
CPSF3-205ENST00000489629 CAPN5O15484 640 aaPredicted RBP7.7□□□□□ -1.18
CPSF3-205ENST00000489629 ADH1CP00326 375 aa7.7□□□□□ -1.18
CPSF3-205ENST00000489629 NBPF14Q5TI25 921 aa7.7□□□□□ -1.18
CPSF3-205ENST00000489629 TRIM46Q7Z4K8 759 aa7.7□□□□□ -1.18
CPSF3-205ENST00000489629 GPKOWQ92917 476 aaPredicted RBP eCLIP7.7□□□□□ -1.18
CPSF3-205ENST00000489629 TRIM47Q96LD4 638 aa7.7□□□□□ -1.18
CPSF3-205ENST00000489629 KLF16Q9BXK1 252 aaPredicted RBP7.7□□□□□ -1.18
CPSF3-205ENST00000489629 SNRPBP14678 240 aaKnown RBP7.69□□□□□ -1.18
CPSF3-205ENST00000489629 GRM5P41594 1212 aa7.69□□□□□ -1.18
CPSF3-205ENST00000489629 BRPF1P55201 1214 aaPredicted RBP7.69□□□□□ -1.18
CPSF3-205ENST00000489629 AGERQ15109 404 aa7.69□□□□□ -1.18
CPSF3-205ENST00000489629 NEUROD2Q15784 382 aa7.69□□□□□ -1.18
CPSF3-205ENST00000489629 LCE2AQ5TA79 106 aaPredicted RBP7.69□□□□□ -1.18
CPSF3-205ENST00000489629 SENP2Q9HC62 589 aa7.69□□□□□ -1.18
CPSF3-205ENST00000489629 TRMT44Q8IYL2 757 aaKnown RBP7.68□□□□□ -1.18
CPSF3-205ENST00000489629 AP1G2O75843 785 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 NR3C2P08235 984 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 BMP1P13497 986 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 TIMP2P16035 220 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 RFC5P40937 340 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 NR6A1Q15406 480 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 KIFC2Q96AC6 838 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 FKBPLQ9UIM3 349 aa7.67□□□□□ -1.18
CPSF3-205ENST00000489629 NR5A1Q13285 461 aa7.66□□□□□ -1.18
CPSF3-205ENST00000489629 ARID5BQ14865 1188 aa7.66□□□□□ -1.18
CPSF3-205ENST00000489629 PDXDC2PQ6P474 469 aa7.66□□□□□ -1.18
CPSF3-205ENST00000489629 IL27Q8NEV9 243 aa7.66□□□□□ -1.18
CPSF3-205ENST00000489629 ATP1B4Q9UN42 357 aaPredicted RBP7.66□□□□□ -1.18
CPSF3-205ENST00000489629 MAP4K5Q9Y4K4 846 aa7.66□□□□□ -1.18
CPSF3-205ENST00000489629 WDR4P57081 412 aaKnown RBP7.65□□□□□ -1.18
CPSF3-205ENST00000489629 TREML4Q6UXN2 200 aa7.65□□□□□ -1.18
CPSF3-205ENST00000489629 EPS8L1Q8TE68 723 aa7.65□□□□□ -1.18
CPSF3-205ENST00000489629 HMX1Q9NP08 348 aaPredicted RBP7.65□□□□□ -1.18
CPSF3-205ENST00000489629 ZC3H4Q9UPT8 1303 aaKnown RBP7.64□□□□□ -1.19
CPSF3-205ENST00000489629 USP17L8P0C7I0 530 aa7.64□□□□□ -1.19
CPSF3-205ENST00000489629 ERFEQ4G0M1 354 aa7.64□□□□□ -1.19
CPSF3-205ENST00000489629 TPRNQ4KMQ1 711 aa7.64□□□□□ -1.19
CPSF3-205ENST00000489629 PCMTD1Q96MG8 357 aaPredicted RBP7.64□□□□□ -1.19
CPSF3-205ENST00000489629 OCSTAMPQ9BR26 566 aa7.64□□□□□ -1.19
CPSF3-205ENST00000489629 MAGEB6P1A0A0J9YX57 407 aa7.63□□□□□ -1.19
CPSF3-205ENST00000489629 ZIC2O95409 532 aaPredicted RBP7.62□□□□□ -1.19
CPSF3-205ENST00000489629 NFX1Q12986 1120 aaKnown RBP7.62□□□□□ -1.19
CPSF3-205ENST00000489629 MRPL14Q6P1L8 145 aaKnown RBP7.62□□□□□ -1.19
CPSF3-205ENST00000489629 ITPKCQ96DU7 683 aa7.62□□□□□ -1.19
CPSF3-205ENST00000489629 ZFP42Q96MM3 310 aa7.62□□□□□ -1.19
CPSF3-205ENST00000489629 ARHGAP9Q9BRR9 750 aa7.62□□□□□ -1.19
CPSF3-205ENST00000489629 CARD14Q9BXL6 1004 aa7.62□□□□□ -1.19
CPSF3-205ENST00000489629 ZFAND3Q9H8U3 227 aa7.62□□□□□ -1.19
CPSF3-205ENST00000489629 FSHRP23945 695 aa7.61□□□□□ -1.19
CPSF3-205ENST00000489629 VASH1Q7L8A9 365 aaPredicted RBP7.61□□□□□ -1.19
CPSF3-205ENST00000489629 GPSM3Q9Y4H4 160 aa7.61□□□□□ -1.19
CPSF3-205ENST00000489629 TMEM259Q4ZIN3 620 aa7.6□□□□□ -1.19
CPSF3-205ENST00000489629 TRIM34Q9BYJ4 488 aa7.6□□□□□ -1.19
CPSF3-205ENST00000489629 TERTO14746 1132 aaKnown RBP7.59□□□□□ -1.19
CPSF3-205ENST00000489629 PTK2Q05397 1052 aa7.59□□□□□ -1.19
CPSF3-205ENST00000489629 LCE2CQ5TA81 110 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms