RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 DDRGK1Q96HY6 314 aa7.78□□□□□ -1.16
SCN1A-205ENST00000473295 PLEKHG3A1L390 1219 aa7.77□□□□□ -1.17
SCN1A-205ENST00000473295 SIAH2O43255 324 aa7.77□□□□□ -1.17
SCN1A-205ENST00000473295 F12P00748 615 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-205ENST00000473295 LINC01559Q495D7 138 aa7.77□□□□□ -1.17
SCN1A-205ENST00000473295 BAP1Q92560 729 aa7.77□□□□□ -1.17
SCN1A-205ENST00000473295 WASF2Q9Y6W5 498 aa7.77□□□□□ -1.17
SCN1A-205ENST00000473295 MPNDQ8N594 471 aa7.76□□□□□ -1.17
SCN1A-205ENST00000473295 ARMC2Q8NEN0 867 aa7.76□□□□□ -1.17
SCN1A-205ENST00000473295 TSC1Q92574 1164 aa7.76□□□□□ -1.17
SCN1A-205ENST00000473295 QPCTQ16769 361 aa7.75□□□□□ -1.17
SCN1A-205ENST00000473295 KDM4CQ9H3R0 1056 aa7.75□□□□□ -1.17
SCN1A-205ENST00000473295 SENP2Q9HC62 589 aa7.75□□□□□ -1.17
SCN1A-205ENST00000473295 FAM174AQ8TBP5 190 aa7.74□□□□□ -1.17
SCN1A-205ENST00000473295 HPS1Q92902 700 aa7.74□□□□□ -1.17
SCN1A-205ENST00000473295 ZNF775Q96BV0 537 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-205ENST00000473295 POTECB2RU33 542 aa7.73□□□□□ -1.17
SCN1A-205ENST00000473295 C11orf95C9JLR9 678 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-205ENST00000473295 SKIV2LQ15477 1246 aaKnown RBP7.73□□□□□ -1.17
SCN1A-205ENST00000473295 SH3D19Q5HYK7 790 aa7.73□□□□□ -1.17
SCN1A-205ENST00000473295 ATP13A2Q9NQ11 1180 aa7.73□□□□□ -1.17
SCN1A-205ENST00000473295 POLR3EQ9NVU0 708 aa7.73□□□□□ -1.17
SCN1A-205ENST00000473295 MAP10Q9P2G4 905 aa7.73□□□□□ -1.17
SCN1A-205ENST00000473295 DACH1Q9UI36 760 aa7.73□□□□□ -1.17
SCN1A-205ENST00000473295 NBPF14Q5TI25 921 aa7.72□□□□□ -1.17
SCN1A-205ENST00000473295 BPHLQ86WA6 291 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-205ENST00000473295 KIFC2Q96AC6 838 aa7.72□□□□□ -1.17
SCN1A-205ENST00000473295 GMPR2Q9P2T1 348 aaKnown RBP7.72□□□□□ -1.17
SCN1A-205ENST00000473295 PER1O15534 1290 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-205ENST00000473295 AGERQ15109 404 aa7.71□□□□□ -1.18
SCN1A-205ENST00000473295 RTL5Q5HYW3 569 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-205ENST00000473295 GPBP1L1Q9HC44 474 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-205ENST00000473295 GPKOWQ92917 476 aaPredicted RBP eCLIP7.7□□□□□ -1.18
SCN1A-205ENST00000473295 ATP1B4Q9UN42 357 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-205ENST00000473295 CAPN5O15484 640 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-205ENST00000473295 TRIM47Q96LD4 638 aa7.69□□□□□ -1.18
SCN1A-205ENST00000473295 TLL2Q9Y6L7 1015 aa7.69□□□□□ -1.18
SCN1A-205ENST00000473295 PPP2R2DQ66LE6 453 aa7.68□□□□□ -1.18
SCN1A-205ENST00000473295 FOXJ1Q92949 421 aa7.68□□□□□ -1.18
SCN1A-205ENST00000473295 CDK15Q96Q40 435 aa7.68□□□□□ -1.18
SCN1A-205ENST00000473295 FAM117AQ9C073 453 aa7.68□□□□□ -1.18
SCN1A-205ENST00000473295 ADH1CP00326 375 aa7.67□□□□□ -1.18
SCN1A-205ENST00000473295 NNTQ13423 1086 aa7.67□□□□□ -1.18
SCN1A-205ENST00000473295 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.67□□□□□ -1.18
SCN1A-205ENST00000473295 NR5A1Q13285 461 aa7.66□□□□□ -1.18
SCN1A-205ENST00000473295 SH3RF1Q7Z6J0 888 aa7.65□□□□□ -1.18
SCN1A-205ENST00000473295 GOPCQ9HD26 462 aa7.65□□□□□ -1.18
SCN1A-205ENST00000473295 ZC3H4Q9UPT8 1303 aaKnown RBP7.65□□□□□ -1.18
SCN1A-205ENST00000473295 CTDSPL2Q05D32 466 aa7.64□□□□□ -1.19
SCN1A-205ENST00000473295 ARID5BQ14865 1188 aa7.64□□□□□ -1.19
SCN1A-205ENST00000473295 PNMA1Q8ND90 353 aa7.64□□□□□ -1.19
SCN1A-205ENST00000473295 MAP4K5Q9Y4K4 846 aa7.64□□□□□ -1.19
SCN1A-205ENST00000473295 WDR4P57081 412 aaKnown RBP7.63□□□□□ -1.19
SCN1A-205ENST00000473295 TREML4Q6UXN2 200 aa7.63□□□□□ -1.19
SCN1A-205ENST00000473295 SH3BP5LQ7L8J4 393 aa7.63□□□□□ -1.19
SCN1A-205ENST00000473295 TRMT44Q8IYL2 757 aaKnown RBP7.63□□□□□ -1.19
SCN1A-205ENST00000473295 C1QTNF2Q9BXJ5 285 aa7.63□□□□□ -1.19
SCN1A-205ENST00000473295 C4orf48Q5BLP8 95 aa7.62□□□□□ -1.19
SCN1A-205ENST00000473295 PDXDC2PQ6P474 469 aa7.62□□□□□ -1.19
SCN1A-205ENST00000473295 PROCA1Q8NCQ7 364 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-205ENST00000473295 MAGEB6P1A0A0J9YX57 407 aa7.61□□□□□ -1.19
SCN1A-205ENST00000473295 WFS1O76024 890 aa7.61□□□□□ -1.19
SCN1A-205ENST00000473295 SNRPBP14678 240 aaKnown RBP7.61□□□□□ -1.19
SCN1A-205ENST00000473295 TIMP2P16035 220 aa7.61□□□□□ -1.19
SCN1A-205ENST00000473295 SCARF1Q14162 830 aa7.61□□□□□ -1.19
SCN1A-205ENST00000473295 NEUROD2Q15784 382 aa7.61□□□□□ -1.19
SCN1A-205ENST00000473295 PCMTD1Q96MG8 357 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-205ENST00000473295 FKBPLQ9UIM3 349 aa7.61□□□□□ -1.19
SCN1A-205ENST00000473295 CDV3Q9UKY7 258 aaKnown RBP7.61□□□□□ -1.19
SCN1A-205ENST00000473295 AP1G2O75843 785 aa7.6□□□□□ -1.19
SCN1A-205ENST00000473295 BMP1P13497 986 aa7.6□□□□□ -1.19
SCN1A-205ENST00000473295 VASH1Q7L8A9 365 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-205ENST00000473295 TRIM46Q7Z4K8 759 aa7.6□□□□□ -1.19
SCN1A-205ENST00000473295 LRRN4Q8WUT4 740 aa7.6□□□□□ -1.19
SCN1A-205ENST00000473295 GPSM3Q9Y4H4 160 aa7.6□□□□□ -1.19
SCN1A-205ENST00000473295 MRPL14Q6P1L8 145 aaKnown RBP7.59□□□□□ -1.19
SCN1A-205ENST00000473295 ARHGAP9Q9BRR9 750 aa7.59□□□□□ -1.19
SCN1A-205ENST00000473295 KLF16Q9BXK1 252 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-205ENST00000473295 ZIC2O95409 532 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-205ENST00000473295 FSHRP23945 695 aa7.58□□□□□ -1.2
SCN1A-205ENST00000473295 GRM5P41594 1212 aa7.58□□□□□ -1.2
SCN1A-205ENST00000473295 NR6A1Q15406 480 aa7.58□□□□□ -1.2
SCN1A-205ENST00000473295 ERFEQ4G0M1 354 aa7.58□□□□□ -1.2
SCN1A-205ENST00000473295 ZBTB33Q86T24 672 aa7.58□□□□□ -1.2
SCN1A-205ENST00000473295 CARD14Q9BXL6 1004 aa7.58□□□□□ -1.2
SCN1A-205ENST00000473295 EMILIN1Q9Y6C2 1016 aa7.58□□□□□ -1.2
SCN1A-205ENST00000473295 TERTO14746 1132 aaKnown RBP7.57□□□□□ -1.2
SCN1A-205ENST00000473295 UPP2O95045 317 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 USP17L8P0C7I0 530 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 RFC5P40937 340 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 PTK2Q05397 1052 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 TMEM259Q4ZIN3 620 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 NPAS3Q8IXF0 933 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 SLC16A10Q8TF71 515 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 SLC10A4Q96EP9 437 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 ZFP42Q96MM3 310 aa7.57□□□□□ -1.2
SCN1A-205ENST00000473295 NR3C2P08235 984 aa7.56□□□□□ -1.2
SCN1A-205ENST00000473295 NFX1Q12986 1120 aaKnown RBP7.56□□□□□ -1.2
SCN1A-205ENST00000473295 LCE2AQ5TA79 106 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-205ENST00000473295 FBXO31Q5XUX0 539 aaPredicted RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms