RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 NUTM2AQ8IVF1 878 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-210ENST00000468534 MAP10Q9P2G4 905 aa10.1□□□□□ -0.79
CCDC88A-210ENST00000468534 TLL2Q9Y6L7 1015 aa10.1□□□□□ -0.79
CCDC88A-210ENST00000468534 SIAH2O43255 324 aa10.09□□□□□ -0.79
CCDC88A-210ENST00000468534 QPCTQ16769 361 aa10.09□□□□□ -0.79
CCDC88A-210ENST00000468534 LYPD8Q6UX82 237 aa10.09□□□□□ -0.79
CCDC88A-210ENST00000468534 ZNF511Q8NB15 262 aa10.09□□□□□ -0.79
CCDC88A-210ENST00000468534 PRPF38BQ5VTL8 546 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-210ENST00000468534 PER1O15534 1290 aaPredicted RBP10.06□□□□□ -0.8
CCDC88A-210ENST00000468534 SNRPBP14678 240 aaKnown RBP10.05□□□□□ -0.8
CCDC88A-210ENST00000468534 POLR3EQ9NVU0 708 aa10.05□□□□□ -0.8
CCDC88A-210ENST00000468534 F12P00748 615 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-210ENST00000468534 CLK2P49760 499 aaKnown RBP10.04□□□□□ -0.8
CCDC88A-210ENST00000468534 LILRB3O75022 631 aa10.03□□□□□ -0.8
CCDC88A-210ENST00000468534 BMP1P13497 986 aa10.03□□□□□ -0.8
CCDC88A-210ENST00000468534 VARSP26640 1264 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-210ENST00000468534 FOXJ1Q92949 421 aa10.03□□□□□ -0.8
CCDC88A-210ENST00000468534 CAPN5O15484 640 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-210ENST00000468534 AGERQ15109 404 aa10.02□□□□□ -0.81
CCDC88A-210ENST00000468534 RTL5Q5HYW3 569 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-210ENST00000468534 SENP2Q9HC62 589 aa10.02□□□□□ -0.81
CCDC88A-210ENST00000468534 TREML4Q6UXN2 200 aa10.01□□□□□ -0.81
CCDC88A-210ENST00000468534 BCANQ96GW7 911 aa10.01□□□□□ -0.81
CCDC88A-210ENST00000468534 TRIM47Q96LD4 638 aa10.01□□□□□ -0.81
CCDC88A-210ENST00000468534 GPBP1L1Q9HC44 474 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-210ENST00000468534 PLEKHG3A1L390 1219 aa10□□□□□ -0.81
CCDC88A-210ENST00000468534 NNTQ13423 1086 aa10□□□□□ -0.81
CCDC88A-210ENST00000468534 ARID5BQ14865 1188 aa10□□□□□ -0.81
CCDC88A-210ENST00000468534 HELBQ8NG08 1087 aaPredicted RBP10□□□□□ -0.81
CCDC88A-210ENST00000468534 RSPH6AQ9H0K4 717 aa10□□□□□ -0.81
CCDC88A-210ENST00000468534 ATP1B4Q9UN42 357 aaPredicted RBP10□□□□□ -0.81
CCDC88A-210ENST00000468534 TUSC1Q2TAM9 212 aa9.99□□□□□ -0.81
CCDC88A-210ENST00000468534 FAM174AQ8TBP5 190 aa9.99□□□□□ -0.81
CCDC88A-210ENST00000468534 TRIM46Q7Z4K8 759 aa9.97□□□□□ -0.81
CCDC88A-210ENST00000468534 KIFC2Q96AC6 838 aa9.97□□□□□ -0.81
CCDC88A-210ENST00000468534 WFS1O76024 890 aa9.96□□□□□ -0.82
CCDC88A-210ENST00000468534 KDM4CQ9H3R0 1056 aa9.96□□□□□ -0.82
CCDC88A-210ENST00000468534 C4orf48Q5BLP8 95 aa9.95□□□□□ -0.82
CCDC88A-210ENST00000468534 ADH1CP00326 375 aa9.94□□□□□ -0.82
CCDC88A-210ENST00000468534 WDR4P57081 412 aaKnown RBP9.94□□□□□ -0.82
CCDC88A-210ENST00000468534 BPHLQ86WA6 291 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-210ENST00000468534 FAM117AQ9C073 453 aa9.94□□□□□ -0.82
CCDC88A-210ENST00000468534 CTDSPL2Q05D32 466 aa9.93□□□□□ -0.82
CCDC88A-210ENST00000468534 NFX1Q12986 1120 aaKnown RBP9.93□□□□□ -0.82
CCDC88A-210ENST00000468534 LCE2AQ5TA79 106 aaPredicted RBP9.93□□□□□ -0.82
CCDC88A-210ENST00000468534 MPNDQ8N594 471 aa9.93□□□□□ -0.82
CCDC88A-210ENST00000468534 ARMC2Q8NEN0 867 aa9.93□□□□□ -0.82
CCDC88A-210ENST00000468534 MAGEB6P1A0A0J9YX57 407 aa9.92□□□□□ -0.82
CCDC88A-210ENST00000468534 PROCA1Q8NCQ7 364 aaPredicted RBP9.92□□□□□ -0.82
CCDC88A-210ENST00000468534 TIMP2P16035 220 aa9.91□□□□□ -0.82
CCDC88A-210ENST00000468534 NBPF14Q5TI25 921 aa9.91□□□□□ -0.82
CCDC88A-210ENST00000468534 ZFP42Q96MM3 310 aa9.91□□□□□ -0.82
CCDC88A-210ENST00000468534 CARD14Q9BXL6 1004 aa9.91□□□□□ -0.82
CCDC88A-210ENST00000468534 TERTO14746 1132 aaKnown RBP9.9□□□□□ -0.82
CCDC88A-210ENST00000468534 SKIV2LQ15477 1246 aaKnown RBP9.9□□□□□ -0.82
CCDC88A-210ENST00000468534 SH3D19Q5HYK7 790 aa9.9□□□□□ -0.82
CCDC88A-210ENST00000468534 FBXO31Q5XUX0 539 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-210ENST00000468534 LRRN4Q8WUT4 740 aa9.9□□□□□ -0.82
CCDC88A-210ENST00000468534 CDK15Q96Q40 435 aa9.9□□□□□ -0.82
CCDC88A-210ENST00000468534 ZIC2O95409 532 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-210ENST00000468534 NR3C2P08235 984 aa9.89□□□□□ -0.83
CCDC88A-210ENST00000468534 DDRGK1Q96HY6 314 aa9.89□□□□□ -0.83
CCDC88A-210ENST00000468534 PURBQ96QR8 312 aaKnown RBP9.89□□□□□ -0.83
CCDC88A-210ENST00000468534 MRPL14Q6P1L8 145 aaKnown RBP9.88□□□□□ -0.83
CCDC88A-210ENST00000468534 ZFAND3Q9H8U3 227 aa9.88□□□□□ -0.83
CCDC88A-210ENST00000468534 FSHRP23945 695 aa9.87□□□□□ -0.83
CCDC88A-210ENST00000468534 SCARF1Q14162 830 aa9.87□□□□□ -0.83
CCDC88A-210ENST00000468534 ITPKCQ96DU7 683 aa9.87□□□□□ -0.83
CCDC88A-210ENST00000468534 GRM5P41594 1212 aa9.86□□□□□ -0.83
CCDC88A-210ENST00000468534 VEGFBP49765 207 aa9.86□□□□□ -0.83
CCDC88A-210ENST00000468534 NR5A1Q13285 461 aa9.86□□□□□ -0.83
CCDC88A-210ENST00000468534 VASH1Q7L8A9 365 aaPredicted RBP9.86□□□□□ -0.83
CCDC88A-210ENST00000468534 SH3BP5LQ7L8J4 393 aa9.86□□□□□ -0.83
CCDC88A-210ENST00000468534 SH3RF1Q7Z6J0 888 aa9.86□□□□□ -0.83
CCDC88A-210ENST00000468534 KLF16Q9BXK1 252 aaPredicted RBP9.86□□□□□ -0.83
CCDC88A-210ENST00000468534 LCE2CQ5TA81 110 aa9.85□□□□□ -0.83
CCDC88A-210ENST00000468534 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.85□□□□□ -0.83
CCDC88A-210ENST00000468534 C1QTNF2Q9BXJ5 285 aa9.85□□□□□ -0.83
CCDC88A-210ENST00000468534 SOBPA7XYQ1 873 aa9.84□□□□□ -0.83
CCDC88A-210ENST00000468534 AP1G2O75843 785 aa9.84□□□□□ -0.83
CCDC88A-210ENST00000468534 NR6A1Q15406 480 aa9.84□□□□□ -0.83
CCDC88A-210ENST00000468534 C6orf118Q5T5N4 469 aa9.84□□□□□ -0.83
CCDC88A-210ENST00000468534 ARHGAP9Q9BRR9 750 aa9.83□□□□□ -0.84
CCDC88A-210ENST00000468534 NXF1Q9UBU9 619 aaKnown RBP9.83□□□□□ -0.84
CCDC88A-210ENST00000468534 SLC16A10Q8TF71 515 aa9.82□□□□□ -0.84
CCDC88A-210ENST00000468534 GPKOWQ92917 476 aaPredicted RBP eCLIP9.82□□□□□ -0.84
CCDC88A-210ENST00000468534 FKBPLQ9UIM3 349 aa9.82□□□□□ -0.84
CCDC88A-210ENST00000468534 ERFEQ4G0M1 354 aa9.81□□□□□ -0.84
CCDC88A-210ENST00000468534 TRMT44Q8IYL2 757 aaKnown RBP9.81□□□□□ -0.84
CCDC88A-210ENST00000468534 PPP2R2DQ66LE6 453 aa9.8□□□□□ -0.84
CCDC88A-210ENST00000468534 MAP4K5Q9Y4K4 846 aa9.8□□□□□ -0.84
CCDC88A-210ENST00000468534 BMP2P12643 396 aa9.79□□□□□ -0.84
CCDC88A-210ENST00000468534 EPS8L1Q8TE68 723 aa9.79□□□□□ -0.84
CCDC88A-210ENST00000468534 WIPF1O43516 503 aa9.78□□□□□ -0.84
CCDC88A-210ENST00000468534 UPP2O95045 317 aa9.78□□□□□ -0.84
CCDC88A-210ENST00000468534 NEUROD2Q15784 382 aa9.78□□□□□ -0.84
CCDC88A-210ENST00000468534 PDXDC2PQ6P474 469 aa9.78□□□□□ -0.84
CCDC88A-210ENST00000468534 ZBTB33Q86T24 672 aa9.78□□□□□ -0.84
CCDC88A-210ENST00000468534 CCDC116Q8IYX3 515 aa9.78□□□□□ -0.84
CCDC88A-210ENST00000468534 LINC00528Q8N1L1 170 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms