RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 RAPGEF4Q8WZA2 1011 aa14.38□□□□□ -0.11
PCF11-201ENST00000298281 PPM1EQ8WY54 764 aa14.37□□□□□ -0.11
PCF11-201ENST00000298281 COMMD10Q9Y6G5 202 aa14.37□□□□□ -0.11
PCF11-201ENST00000298281 NINLQ9Y2I6 1382 aa14.37□□□□□ -0.11
PCF11-201ENST00000298281 CCDC181Q5TID7 509 aa14.37□□□□□ -0.11
PCF11-201ENST00000298281 CRBNQ96SW2 442 aa14.37□□□□□ -0.11
PCF11-201ENST00000298281 PSMA5P28066 241 aa14.37□□□□□ -0.11
PCF11-201ENST00000298281 APAF1O14727 1248 aa14.36□□□□□ -0.11
PCF11-201ENST00000298281 ZWINTO95229 277 aa14.36□□□□□ -0.11
PCF11-201ENST00000298281 SMARCE1Q969G3 411 aa14.36□□□□□ -0.11
PCF11-201ENST00000298281 MINK1Q8N4C8 1332 aaPredicted RBP14.36□□□□□ -0.11
PCF11-201ENST00000298281 LEKR1Q6ZMV7 388 aa14.36□□□□□ -0.11
PCF11-201ENST00000298281 VPS37CA5D8V6 355 aaPredicted RBP14.36□□□□□ -0.11
PCF11-201ENST00000298281 KIAA0754O94854 1291 aa14.36□□□□□ -0.11
PCF11-201ENST00000298281 CA8P35219 290 aa14.35□□□□□ -0.11
PCF11-201ENST00000298281 RBM5P52756 815 aaKnown RBP eCLIP14.35□□□□□ -0.112e-6■■□□□ 12.9
PCF11-201ENST00000298281 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.35□□□□□ -0.11
PCF11-201ENST00000298281 SART3Q15020 963 aaKnown RBP14.35□□□□□ -0.11
PCF11-201ENST00000298281 TXLNAP40222 546 aa14.35□□□□□ -0.11
PCF11-201ENST00000298281 CCDC91Q7Z6B0 441 aa14.35□□□□□ -0.11
PCF11-201ENST00000298281 TTC16Q8NEE8 873 aa14.35□□□□□ -0.11
PCF11-201ENST00000298281 WASHC4Q2M389 1173 aa14.35□□□□□ -0.11
PCF11-201ENST00000298281 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
PCF11-201ENST00000298281 TSPYL4Q9UJ04 414 aa14.34□□□□□ -0.11
PCF11-201ENST00000298281 PTPRGP23470 1445 aa14.34□□□□□ -0.11
PCF11-201ENST00000298281 MAP3K9P80192 1104 aa14.33□□□□□ -0.11
PCF11-201ENST00000298281 DHX57Q6P158 1386 aaKnown RBP14.33□□□□□ -0.12
PCF11-201ENST00000298281 FILIP1LQ4L180 1135 aa14.33□□□□□ -0.12
PCF11-201ENST00000298281 DEF6Q9H4E7 631 aa14.33□□□□□ -0.12
PCF11-201ENST00000298281 TOP2AP11388 1531 aaKnown RBP14.33□□□□□ -0.12
PCF11-201ENST00000298281 LETM1O95202 739 aaPredicted RBP14.33□□□□□ -0.12
PCF11-201ENST00000298281 PDCP20941 246 aa14.33□□□□□ -0.12
PCF11-201ENST00000298281 EXOC6Q8TAG9 804 aa14.33□□□□□ -0.12
PCF11-201ENST00000298281 DNAI2Q9GZS0 605 aa14.33□□□□□ -0.12
PCF11-201ENST00000298281 DHX8Q14562 1220 aaKnown RBP14.32□□□□□ -0.12
PCF11-201ENST00000298281 RIC3Q7Z5B4 369 aa14.32□□□□□ -0.12
PCF11-201ENST00000298281 HIP1O00291 1037 aa14.32□□□□□ -0.12
PCF11-201ENST00000298281 SLC3A2P08195 630 aaKnown RBP14.32□□□□□ -0.12
PCF11-201ENST00000298281 MTERF4Q7Z6M4 381 aaKnown RBP14.32□□□□□ -0.12
PCF11-201ENST00000298281 EIF3JO75822 258 aaKnown RBP14.32□□□□□ -0.12
PCF11-201ENST00000298281 MCM2P49736 904 aa14.32□□□□□ -0.12
PCF11-201ENST00000298281 MROH2BQ7Z745 1585 aa14.32□□□□□ -0.12
PCF11-201ENST00000298281 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.32□□□□□ -0.12
PCF11-201ENST00000298281 ATF3P18847 181 aa14.31□□□□□ -0.12
PCF11-201ENST00000298281 TANGO6Q9C0B7 1094 aa14.31□□□□□ -0.12
PCF11-201ENST00000298281 FAM177BA6PVY3 158 aa14.31□□□□□ -0.12
PCF11-201ENST00000298281 NEUROD6Q96NK8 337 aa14.31□□□□□ -0.12
PCF11-201ENST00000298281 TBC1D2BQ9UPU7 963 aa14.31□□□□□ -0.12
PCF11-201ENST00000298281 PIP4K2AP48426 406 aaPredicted RBP14.31□□□□□ -0.12
PCF11-201ENST00000298281 KIF7Q2M1P5 1343 aa14.31□□□□□ -0.12
PCF11-201ENST00000298281 CNTROBQ8N137 903 aa14.31□□□□□ -0.12
PCF11-201ENST00000298281 ERC1Q8IUD2 1116 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 CCP110O43303 1012 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 UBTFL1P0CB47 393 aaPredicted RBP14.3□□□□□ -0.12
PCF11-201ENST00000298281 SDF4Q9BRK5 362 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 ZNHIT6Q9NWK9 470 aaKnown RBP14.3□□□□□ -0.12
PCF11-201ENST00000298281 MRPS9P82933 396 aaKnown RBP14.3□□□□□ -0.12
PCF11-201ENST00000298281 MYOM3Q5VTT5 1437 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 SMC2O95347 1197 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 GNAI3P08754 354 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 ATP2B1P20020 1258 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 FANCIQ9NVI1 1328 aa14.3□□□□□ -0.12
PCF11-201ENST00000298281 GIMAP7Q8NHV1 300 aa14.29□□□□□ -0.12
PCF11-201ENST00000298281 FEZ1Q99689 392 aa14.29□□□□□ -0.12
PCF11-201ENST00000298281 LUC7LQ9NQ29 371 aaKnown RBP14.29□□□□□ -0.12
PCF11-201ENST00000298281 CDC45O75419 566 aa14.29□□□□□ -0.12
PCF11-201ENST00000298281 WDR78Q5VTH9 848 aa14.29□□□□□ -0.12
PCF11-201ENST00000298281 FAM43AQ8N2R8 423 aa14.29□□□□□ -0.12
PCF11-201ENST00000298281 PABPN1LA6NDY0 278 aaKnown RBP14.29□□□□□ -0.12
PCF11-201ENST00000298281 C22orf23Q9BZE7 217 aa14.29□□□□□ -0.12
PCF11-201ENST00000298281 MBD3O95983 291 aa14.28□□□□□ -0.12
PCF11-201ENST00000298281 RABEP1Q15276 862 aa14.28□□□□□ -0.12
PCF11-201ENST00000298281 SCLT1Q96NL6 688 aa14.28□□□□□ -0.12
PCF11-201ENST00000298281 SPATA24Q86W54 205 aa14.28□□□□□ -0.12
PCF11-201ENST00000298281 FAM193AP78312 1265 aa14.28□□□□□ -0.12
PCF11-201ENST00000298281 CFAP57Q96MR6 1250 aa14.27□□□□□ -0.12
PCF11-201ENST00000298281 CCDC39Q9UFE4 941 aa14.27□□□□□ -0.13
PCF11-201ENST00000298281 WDHD1O75717 1129 aaPredicted RBP14.27□□□□□ -0.13
PCF11-201ENST00000298281 TAF3Q5VWG9 929 aa14.26□□□□□ -0.13
PCF11-201ENST00000298281 KINO60870 393 aaKnown RBP14.26□□□□□ -0.13
PCF11-201ENST00000298281 SOGA3Q5TF21 947 aa14.26□□□□□ -0.13
PCF11-201ENST00000298281 SMC1AQ14683 1233 aaKnown RBP14.26□□□□□ -0.13
PCF11-201ENST00000298281 CCDC30Q5VVM6 783 aa14.26□□□□□ -0.13
PCF11-201ENST00000298281 GAS2L2Q8NHY3 880 aa14.26□□□□□ -0.13
PCF11-201ENST00000298281 CCDC175P0C221 793 aa14.25□□□□□ -0.13
PCF11-201ENST00000298281 MAP2K1Q02750 393 aaPredicted RBP14.25□□□□□ -0.13
PCF11-201ENST00000298281 JMYQ8N9B5 988 aa14.25□□□□□ -0.13
PCF11-201ENST00000298281 SLC26A8Q96RN1 970 aa14.25□□□□□ -0.13
PCF11-201ENST00000298281 TXLNBQ8N3L3 684 aa14.25□□□□□ -0.13
PCF11-201ENST00000298281 LNPKQ9C0E8 428 aa14.25□□□□□ -0.13
PCF11-201ENST00000298281 CUX1P39880 1505 aa14.25□□□□□ -0.13
PCF11-201ENST00000298281 LRRFIP2Q9Y608 721 aaKnown RBP14.25□□□□□ -0.13
PCF11-201ENST00000298281 DNAJC2Q99543 621 aaKnown RBP14.24□□□□□ -0.13
PCF11-201ENST00000298281 SSX2IPQ9Y2D8 614 aa14.24□□□□□ -0.13
PCF11-201ENST00000298281 MRE11P49959 708 aa14.24□□□□□ -0.13
PCF11-201ENST00000298281 ZSCAN29Q8IWY8 852 aaPredicted RBP14.24□□□□□ -0.13
PCF11-201ENST00000298281 FMNL2Q96PY5 1086 aa14.24□□□□□ -0.13
PCF11-201ENST00000298281 AIMP1Q12904 312 aaKnown RBP14.24□□□□□ -0.13
PCF11-201ENST00000298281 ZMYND15Q9H091 742 aa14.24□□□□□ -0.13
PCF11-201ENST00000298281 CFAP45Q9UL16 551 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms