RNA–Protein interactions for RNA: ENST00000216484.6

SPTLC2-201, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC2, Length 8,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-201ENST00000216484 SLC3A2P08195 630 aaKnown RBP17.33■□□□□ 0.36
SPTLC2-201ENST00000216484 UQCRHLA0A096LP55 91 aa17.33■□□□□ 0.36
SPTLC2-201ENST00000216484 UQCRHP07919 91 aa17.33■□□□□ 0.36
SPTLC2-201ENST00000216484 CEP164Q9UPV0 1460 aa17.33■□□□□ 0.36
SPTLC2-201ENST00000216484 COG3Q96JB2 828 aa17.33■□□□□ 0.36
SPTLC2-201ENST00000216484 KIF27Q86VH2 1401 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 AEBP1Q8IUX7 1158 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 CNTROBQ8N137 903 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 KIAA1328Q86T90 577 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 EXOC6Q8TAG9 804 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 TRAK2O60296 914 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 TMCO3Q6UWJ1 677 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 LNPKQ9C0E8 428 aa17.32■□□□□ 0.36
SPTLC2-201ENST00000216484 CFAP57Q96MR6 1250 aa17.31■□□□□ 0.36
SPTLC2-201ENST00000216484 ZNF396Q96N95 335 aaPredicted RBP17.31■□□□□ 0.36
SPTLC2-201ENST00000216484 NFKBIBQ15653 356 aa17.31■□□□□ 0.36
SPTLC2-201ENST00000216484 UBE4AQ14139 1066 aa17.3■□□□□ 0.36
SPTLC2-201ENST00000216484 JAKMIP3Q5VZ66 844 aa17.3■□□□□ 0.36
SPTLC2-201ENST00000216484 RIC3Q7Z5B4 369 aa17.3■□□□□ 0.36
SPTLC2-201ENST00000216484 TRIM21P19474 475 aaKnown RBP17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 GOPCQ9HD26 462 aa17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 DDX11Q96FC9 970 aa17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 PHF23Q9BUL5 403 aaPredicted RBP17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 FIBPO43427 364 aa17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 PRPF40AO75400 957 aaKnown RBP17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 NUP155O75694 1391 aa17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 PSMD1Q99460 953 aa17.29■□□□□ 0.36
SPTLC2-201ENST00000216484 SHTN1A0MZ66 631 aa17.28■□□□□ 0.36
SPTLC2-201ENST00000216484 AIMP1Q12904 312 aaKnown RBP17.28■□□□□ 0.36
SPTLC2-201ENST00000216484 DCAF8L1A6NGE4 600 aa17.28■□□□□ 0.36
SPTLC2-201ENST00000216484 DACH1Q9UI36 760 aa17.28■□□□□ 0.36
SPTLC2-201ENST00000216484 PDCP20941 246 aa17.28■□□□□ 0.36
SPTLC2-201ENST00000216484 MPNDQ8N594 471 aa17.28■□□□□ 0.36
SPTLC2-201ENST00000216484 IPO4Q8TEX9 1081 aaKnown RBP17.28■□□□□ 0.36
SPTLC2-201ENST00000216484 TRAK1Q9UPV9 953 aa17.27■□□□□ 0.36
SPTLC2-201ENST00000216484 CCDC192P0DO97 292 aa17.27■□□□□ 0.36
SPTLC2-201ENST00000216484 TNMDQ9H2S6 317 aa17.27■□□□□ 0.36
SPTLC2-201ENST00000216484 MYBBP1AQ9BQG0 1328 aaKnown RBP17.27■□□□□ 0.36
SPTLC2-201ENST00000216484 CRACR2AQ9BSW2 395 aa17.27■□□□□ 0.35
SPTLC2-201ENST00000216484 STK38Q15208 465 aa17.27■□□□□ 0.35
SPTLC2-201ENST00000216484 TBC1D2BQ9UPU7 963 aa17.27■□□□□ 0.35
SPTLC2-201ENST00000216484 ZWINTO95229 277 aa17.26■□□□□ 0.35
SPTLC2-201ENST00000216484 DZIP1LQ8IYY4 767 aaKnown RBP17.26■□□□□ 0.35
SPTLC2-201ENST00000216484 FEZ1Q99689 392 aa17.26■□□□□ 0.35
SPTLC2-201ENST00000216484 MBD3O95983 291 aa17.26■□□□□ 0.35
SPTLC2-201ENST00000216484 SERPINA10Q9UK55 444 aa17.26■□□□□ 0.35
SPTLC2-201ENST00000216484 ME1P48163 572 aa17.25■□□□□ 0.35
SPTLC2-201ENST00000216484 FANCIQ9NVI1 1328 aa17.25■□□□□ 0.35
SPTLC2-201ENST00000216484 SMC1AQ14683 1233 aaKnown RBP17.25■□□□□ 0.35
SPTLC2-201ENST00000216484 DHX8Q14562 1220 aaKnown RBP17.25■□□□□ 0.35
SPTLC2-201ENST00000216484 ERC1Q8IUD2 1116 aa17.25■□□□□ 0.35
SPTLC2-201ENST00000216484 JMYQ8N9B5 988 aa17.25■□□□□ 0.35
SPTLC2-201ENST00000216484 MPHOSPH9Q99550 1183 aa17.24■□□□□ 0.35
SPTLC2-201ENST00000216484 CCDC148Q8NFR7 591 aa17.24■□□□□ 0.35
SPTLC2-201ENST00000216484 FSD1Q9BTV5 496 aa17.24■□□□□ 0.35
SPTLC2-201ENST00000216484 ZNF397Q8NF99 534 aaPredicted RBP17.23■□□□□ 0.35
SPTLC2-201ENST00000216484 PRDM2Q13029 1718 aa17.23■□□□□ 0.35
SPTLC2-201ENST00000216484 PANK3Q9H999 370 aa17.23■□□□□ 0.35
SPTLC2-201ENST00000216484 CBFA2T2O43439 604 aa17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 RNF187Q5TA31 235 aaPredicted RBP17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 COMMD10Q9Y6G5 202 aa17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 MPHOSPH10O00566 681 aaKnown RBP17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 EPB41L2O43491 1005 aaKnown RBP17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 TMCO5BA8MYB1 307 aa17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 RIPK4P57078 832 aa17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 IFFO1Q0D2I5 559 aa17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 ZNF526Q8TF50 670 aaPredicted RBP17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 TAF4BQ92750 862 aa17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 GSTTP1A0A1W2PQM5 241 aa17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 BMS1Q14692 1282 aaKnown RBP17.22■□□□□ 0.35
SPTLC2-201ENST00000216484 TSPYL4Q9UJ04 414 aa17.21■□□□□ 0.35
SPTLC2-201ENST00000216484 POTEJP0CG39 1038 aa17.21■□□□□ 0.34
SPTLC2-201ENST00000216484 PSME1Q06323 249 aa17.21■□□□□ 0.34
SPTLC2-201ENST00000216484 STK3Q13188 491 aa17.21■□□□□ 0.34
SPTLC2-201ENST00000216484 PPP1R1BQ9UD71 204 aaPredicted RBP17.21■□□□□ 0.34
SPTLC2-201ENST00000216484 ANKRD18BA2A2Z9 1011 aa17.2■□□□□ 0.34
SPTLC2-201ENST00000216484 SSBP05455 408 aaKnown RBP eCLIP17.2■□□□□ 0.34
SPTLC2-201ENST00000216484 BRPF3Q9ULD4 1205 aa17.2■□□□□ 0.34
SPTLC2-201ENST00000216484 MAP9Q49MG5 647 aa17.2■□□□□ 0.34
SPTLC2-201ENST00000216484 UBTFL1P0CB47 393 aaPredicted RBP17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 API5Q9BZZ5 524 aaKnown RBP17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 NEK4P51957 841 aa17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 CETN2P41208 172 aa17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 CDC45O75419 566 aa17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 PRDM10Q9NQV6 1147 aa17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 GCOM1H8Y6P7 765 aaPredicted RBP17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 MYZAPP0CAP1 466 aa17.19■□□□□ 0.34
SPTLC2-201ENST00000216484 EIF5P55010 431 aaKnown RBP17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 CCDC69A6NI79 296 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 CCDC175P0C221 793 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 WASHC2CQ9Y4E1 1318 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 TNNT1P13805 278 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 CASQ1P31415 396 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 CCDC178Q5BJE1 867 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 TRIM22Q8IYM9 498 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 CTNNBL1Q8WYA6 563 aaPredicted RBP17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 SOGA3Q5TF21 947 aa17.18■□□□□ 0.34
SPTLC2-201ENST00000216484 FAM177BA6PVY3 158 aa17.17■□□□□ 0.34
SPTLC2-201ENST00000216484 DAAM2Q86T65 1068 aa17.17■□□□□ 0.34
SPTLC2-201ENST00000216484 HOOK3Q86VS8 718 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms