RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CHMP2BQ9UQN3 213 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 PCDHB12Q9Y5F1 795 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 IGLV3-10A0A075B6K4 115 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 A0A087WUV0 522 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-202ENST00000372405 LCHNA4D1U4 455 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 WASH4PA8MWX3 477 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 FOXO6A8MYZ6 492 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 RGS16O15492 202 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CNTN5O94779 1100 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CSH1P0DML2 217 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CSH2P0DML3 217 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CD68P34810 354 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-202ENST00000372405 RING1Q06587 406 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 TWF1Q12792 350 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 STAT4Q14765 748 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 ALFQ53S48 1182 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 NADSYN1Q6IA69 706 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 PPP1R21Q6ZMI0 780 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 TCEAL8Q8IYN2 117 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CYP4X1Q8N118 509 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 RTL3Q8N8U3 475 aaKnown RBP14.14□□□□□ -0.15
PTPRF-202ENST00000372405 KLHL23Q8NBE8 558 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 OVCA2Q8WZ82 227 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 IGSF8Q969P0 613 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 PSD3Q9NYI0 1048 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 FNIP2Q9P278 1114 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 IGSF9Q9P2J2 1179 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CARNS1A5YM72 827 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 COCHO43405 550 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 STK10O94804 968 aaKnown RBP14.14□□□□□ -0.15
PTPRF-202ENST00000372405 FDFT1P37268 417 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 PPARDQ03181 441 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 PLD1Q13393 1074 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CCDC38Q502W7 563 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 RAP1GAP2Q684P5 730 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 FBXL22Q6P050 247 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 CROCCP2Q86T23 111 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 TMEM150AQ86TG1 271 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 PDCD7Q8N8D1 485 aaKnown RBP14.14□□□□□ -0.15
PTPRF-202ENST00000372405 ATP6V0D2Q8N8Y2 350 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 PDZD8Q8NEN9 1154 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 TRMT2BQ96GJ1 504 aaKnown RBP14.14□□□□□ -0.15
PTPRF-202ENST00000372405 RXFP1Q9HBX9 757 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 ZNF212Q9UDV6 495 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 SLC12A6Q9UHW9 1150 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 RABGEF1Q9UJ41 708 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 INSL6Q9Y581 213 aa14.14□□□□□ -0.15
PTPRF-202ENST00000372405 GOLGA6L7A0A1B0GV03 622 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 E7EVH7 732 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 DFFAO00273 331 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 PRRG1O14668 218 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 ZBTB24O43167 697 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 MAFKO60675 156 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 PIAS1O75925 651 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 AGTP01019 485 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 CNPP09543 421 aaKnown RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 SPATA31D3P0C874 917 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 CTSAP10619 480 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 ATP5C1P36542 298 aaKnown RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 ALDH1A3P47895 512 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 EFTUD2Q15029 972 aaKnown RBP eCLIP14.13□□□□□ -0.157e-6■■■□□ 16.7
PTPRF-202ENST00000372405 PARP6Q2NL67 630 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 SPATA31D4Q6ZUB0 917 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 C3orf62Q6ZUJ4 267 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 PID1Q7Z2X4 250 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 GPR65Q8IYL9 337 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 C7orf61Q8IZ16 206 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 ATP11CQ8NB49 1132 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 PKNOX2Q96KN3 472 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 SIGLEC10Q96LC7 697 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 TSGA13Q96PP4 275 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 FRMD8Q9BZ67 464 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 KLHL8Q9P2G9 620 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 PPARGC1AQ9UBK2 798 aaKnown RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 PRKAG2Q9UGJ0 569 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 LGALS13Q9UHV8 139 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 DNMT3LQ9UJW3 386 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 INSL5Q9Y5Q6 135 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 DENND4CQ5VZ89 1909 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 EXOC1LA0A1B0GW35 172 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 SHOX2O60902 331 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 SYN1P17600 705 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 LMAN1P49257 510 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 ZNF33AQ06730 810 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 OLIG2Q13516 323 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 TEX44Q53QW1 395 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 HECTD3Q5T447 861 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 TTC19Q6DKK2 380 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 KLHDC10Q6PID8 442 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 TFAP2DQ7Z6R9 452 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 DNAJB7Q7Z6W7 309 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 HERC6Q8IVU3 1022 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 MPP5Q8N3R9 675 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 LZTR1Q8N653 840 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 CNTD1Q8N815 330 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 SP7Q8TDD2 431 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 AGAP3Q96P47 875 aa14.13□□□□□ -0.15
PTPRF-202ENST00000372405 TRIM56Q9BRZ2 755 aaKnown RBP14.13□□□□□ -0.15
PTPRF-202ENST00000372405 ZBED2Q9BTP6 218 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms