RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 FSCN3Q9NQT6 498 aa18.33■□□□□ 0.52
HDDC3-201ENST00000330334 WASF3Q9UPY6 502 aa18.33■□□□□ 0.52
HDDC3-201ENST00000330334 A0A1B0GVM2 712 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 TCAF2A6NFQ2 919 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 RNASEH1O60930 286 aaKnown RBP18.32■□□□□ 0.52
HDDC3-201ENST00000330334 DAB1O75553 588 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 CD59P13987 128 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 ACSL1P33121 698 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 MATKP42679 507 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 C5orf22Q49AR2 442 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 C9orf64Q5T6V5 341 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 IL27RAQ6UWB1 636 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 MMS22LQ6ZRQ5 1243 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 RBM43Q6ZSC3 357 aaKnown RBP18.32■□□□□ 0.52
HDDC3-201ENST00000330334 DEFB124Q8NES8 71 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 RNF34Q969K3 372 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 NT5C3BQ969T7 300 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 PGAP3Q96FM1 320 aaPredicted RBP18.32■□□□□ 0.52
HDDC3-201ENST00000330334 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.32■□□□□ 0.52
HDDC3-201ENST00000330334 FHOD1Q9Y613 1164 aa18.32■□□□□ 0.52
HDDC3-201ENST00000330334 EDDM13A0A1B0GTR0 161 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 SIN3BO75182 1162 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 GRAP2O75791 330 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 SEMA4FO95754 770 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 LSM8O95777 96 aaKnown RBP18.31■□□□□ 0.52
HDDC3-201ENST00000330334 PNMA6AP0CW24 399 aaPredicted RBP18.31■□□□□ 0.52
HDDC3-201ENST00000330334 GRIK2Q13002 908 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 AUHQ13825 339 aaKnown RBP18.31■□□□□ 0.52
HDDC3-201ENST00000330334 RAPGEF1Q13905 1077 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 HSP90AA4PQ58FG1 418 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 ACBD5Q5T8D3 534 aaPredicted RBP18.31■□□□□ 0.52
HDDC3-201ENST00000330334 FBXL22Q6P050 247 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 FAM124AQ86V42 546 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 CACUL1Q86Y37 369 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 APCDD1Q8J025 514 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 CCAR2Q8N163 923 aaKnown RBP18.31■□□□□ 0.52
HDDC3-201ENST00000330334 C18orf8Q96DM3 657 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 NPY6RQ99463 290 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 PABPC3Q9H361 631 aaKnown RBP18.31■□□□□ 0.52
HDDC3-201ENST00000330334 EIF2B4Q9UI10 523 aaKnown RBP18.31■□□□□ 0.52
HDDC3-201ENST00000330334 NCKAP1Q9Y2A7 1128 aa18.31■□□□□ 0.52
HDDC3-201ENST00000330334 M0QYT0 321 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 PES1O00541 588 aaKnown RBP18.3■□□□□ 0.52
HDDC3-201ENST00000330334 F9P00740 461 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 ZNF883P0CG24 379 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 NNMTP40261 264 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 CXCR3P49682 368 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 BRMS1LQ5PSV4 323 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 CDKAL1Q5VV42 579 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 RNF219Q5W0B1 726 aaPredicted RBP18.3■□□□□ 0.52
HDDC3-201ENST00000330334 ARCQ7LC44 396 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 ZCCHC9Q8N567 271 aaKnown RBP18.3■□□□□ 0.52
HDDC3-201ENST00000330334 MIR1-1HGQ9H1L0 117 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 PDCL3Q9H2J4 239 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 C6orf106Q9H6K1 298 aaPredicted RBP18.3■□□□□ 0.52
HDDC3-201ENST00000330334 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.3■□□□□ 0.52
HDDC3-201ENST00000330334 ADAMTS1Q9UHI8 967 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 SLCO3A1Q9UIG8 710 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 STAP1Q9ULZ2 295 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 DAAM1Q9Y4D1 1078 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 PAXBP1Q9Y5B6 917 aa18.3■□□□□ 0.52
HDDC3-201ENST00000330334 KMT2BQ9UMN6 2715 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-201ENST00000330334 CACNA1BQ00975 2339 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 TTC34A8MYJ7 566 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 F8VZ95 297 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 PAGE1O75459 146 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 CLDN11O75508 207 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 CTSOP43234 321 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-201ENST00000330334 AFF3P51826 1226 aaKnown RBP18.29■□□□□ 0.52
HDDC3-201ENST00000330334 NME3Q13232 169 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 CST6Q15828 149 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 CXorf57Q6NSI4 855 aaKnown RBP18.29■□□□□ 0.52
HDDC3-201ENST00000330334 ERICH1Q86X53 443 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 ZNF677Q86XU0 584 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 DHX40Q8IX18 779 aaKnown RBP18.29■□□□□ 0.52
HDDC3-201ENST00000330334 OR2I1PQ8NGU4 316 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 IGSF8Q969P0 613 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 BIRC7Q96CA5 298 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 ALG14Q96F25 216 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 C1orf74Q96LT6 269 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 RPRD1AQ96P16 312 aaPredicted RBP18.29■□□□□ 0.52
HDDC3-201ENST00000330334 GBP4Q96PP9 640 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 FAM129BQ96TA1 746 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 MTG2Q9H4K7 406 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 WDCPQ9H6R7 721 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 FBXL12Q9NXK8 326 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 ARHGEF38Q9NXL2 777 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 FZD4Q9ULV1 537 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 TBC1D30Q9Y2I9 924 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 HS3ST4Q9Y661 456 aa18.29■□□□□ 0.52
HDDC3-201ENST00000330334 MAP1BP46821 2468 aaKnown RBP18.28■□□□□ 0.52
HDDC3-201ENST00000330334 SYNJ2BP-COX16A0A087WUM0 186 aa18.28■□□□□ 0.52
HDDC3-201ENST00000330334 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.28■□□□□ 0.52
HDDC3-201ENST00000330334 C10orf142B7Z368 130 aa18.28■□□□□ 0.52
HDDC3-201ENST00000330334 PDGFRAP16234 1089 aa18.28■□□□□ 0.52
HDDC3-201ENST00000330334 CD27P26842 260 aa18.28■□□□□ 0.52
HDDC3-201ENST00000330334 MZF1P28698 734 aaPredicted RBP18.28■□□□□ 0.52
HDDC3-201ENST00000330334 ZNF177Q13360 481 aaPredicted RBP18.28■□□□□ 0.52
HDDC3-201ENST00000330334 ELAVL3Q14576 367 aaKnown RBP18.28■□□□□ 0.52
HDDC3-201ENST00000330334 SLC25A52Q3SY17 297 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms