RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 IGLV3-25P01717 112 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 CHN1P15882 459 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 TAF12Q16514 161 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 PDE12Q6L8Q7 609 aaKnown RBP23.27■■□□□ 1.32
CDX1-201ENST00000231656 CCDC149Q6ZUS6 474 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 ATP11CQ8NB49 1132 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 TRMT2BQ96GJ1 504 aaKnown RBP23.27■■□□□ 1.32
CDX1-201ENST00000231656 SMOC2Q9H3U7 446 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 SLC28A3Q9HAS3 691 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.27■■□□□ 1.32
CDX1-201ENST00000231656 ATG2AQ2TAZ0 1938 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 C5orf60A6NFR6 353 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 EEF2KO00418 725 aaKnown RBP23.27■■□□□ 1.32
CDX1-201ENST00000231656 CREB3O43889 395 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 CXCR3P49682 368 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 SEC24CP53992 1094 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 PLD1Q13393 1074 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 EIF4EBP2Q13542 120 aaPredicted RBP23.27■■□□□ 1.32
CDX1-201ENST00000231656 PAFAH1B3Q15102 231 aaKnown RBP23.27■■□□□ 1.32
CDX1-201ENST00000231656 BBS9Q3SYG4 887 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 PPP1R21Q6ZMI0 780 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 RFX8Q6ZV50 586 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 BZW1Q7L1Q6 419 aaKnown RBP23.27■■□□□ 1.32
CDX1-201ENST00000231656 DNAJB7Q7Z6W7 309 aaPredicted RBP23.27■■□□□ 1.32
CDX1-201ENST00000231656 CCDC33Q8N5R6 958 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 FBXO36Q8NEA4 188 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 ARNTL2Q8WYA1 636 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 OVCA2Q8WZ82 227 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 CASP10Q92851 521 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 PSMG2Q969U7 264 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 KLC2Q9H0B6 622 aa23.27■■□□□ 1.32
CDX1-201ENST00000231656 FAM72CH0Y354 149 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 DCLK1O15075 740 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 C8AP07357 584 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 VAV1P15498 845 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 TSHRP16473 764 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 FAM72AQ5TYM5 149 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 FAM72DQ6L9T8 149 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 MSANTD2Q6P1R3 559 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 CAPN12Q6ZSI9 719 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 NLRP14Q86W24 1093 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 FAM72BQ86X60 149 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 PDZD8Q8NEN9 1154 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 TFB1MQ8WVM0 346 aaKnown RBP23.26■■□□□ 1.31
CDX1-201ENST00000231656 ATXN2LQ8WWM7 1075 aaKnown RBP23.26■■□□□ 1.31
CDX1-201ENST00000231656 MAML1Q92585 1016 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 XPO6Q96QU8 1125 aaKnown RBP23.26■■□□□ 1.31
CDX1-201ENST00000231656 ETNK1Q9HBU6 452 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 PPANQ9NQ55 473 aaKnown RBP23.26■■□□□ 1.31
CDX1-201ENST00000231656 SFMBT1Q9UHJ3 866 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 PRDM4Q9UKN5 801 aa23.26■■□□□ 1.31
CDX1-201ENST00000231656 PRKD1Q15139 912 aaPredicted RBP23.25■■□□□ 1.31
CDX1-201ENST00000231656 FAXCQ5TGI0 409 aa23.25■■□□□ 1.31
CDX1-201ENST00000231656 ZNF512Q96ME7 567 aaPredicted RBP23.25■■□□□ 1.31
CDX1-201ENST00000231656 FRMD8Q9BZ67 464 aaPredicted RBP23.25■■□□□ 1.31
CDX1-201ENST00000231656 PPCSQ9HAB8 311 aa23.25■■□□□ 1.31
CDX1-201ENST00000231656 RABGEF1Q9UJ41 708 aa23.25■■□□□ 1.31
CDX1-201ENST00000231656 ANAPC1Q9H1A4 1944 aa23.25■■□□□ 1.31
CDX1-201ENST00000231656 FOXO6A8MYZ6 492 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 IRAK2O43187 625 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 METTL18O95568 372 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 LRG1P02750 347 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 CREB1P16220 341 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 SSTR1P30872 391 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 PHBP35232 272 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 HCAR3P49019 387 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 SNX30Q5VWJ9 437 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 HEATR6Q6AI08 1181 aaKnown RBP23.24■■□□□ 1.31
CDX1-201ENST00000231656 ITIH5Q86UX2 942 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 IGDCC3Q8IVU1 814 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 HTR3CQ8WXA8 447 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 TBK1Q9UHD2 729 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 ASB3Q9Y575 518 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 TEX264Q9Y6I9 313 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 GMNCA6NCL1 334 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 NDUFAB1O14561 156 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 CLASP2O75122 1294 aaKnown RBP23.24■■□□□ 1.31
CDX1-201ENST00000231656 C1RP00736 705 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 MTM1Q13496 603 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 RASA2Q15283 850 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 ARL13BQ3SXY8 428 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 SYCP2LQ5T4T6 812 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 TADA2BQ86TJ2 420 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 WDCPQ9H6R7 721 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 OLA1Q9NTK5 396 aaKnown RBP23.24■■□□□ 1.31
CDX1-201ENST00000231656 UXTQ9UBK9 157 aaPredicted RBP23.24■■□□□ 1.31
CDX1-201ENST00000231656 FETUBQ9UGM5 382 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 SLC24A2Q9UI40 661 aa23.24■■□□□ 1.31
CDX1-201ENST00000231656 ZNF840PA6NDX5 716 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 EPOPA6NHQ4 379 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 MSI1O43347 362 aaKnown RBP23.23■■□□□ 1.31
CDX1-201ENST00000231656 TLR5O60602 858 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 TBX18O95935 607 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 ELK3P41970 407 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 TMED2Q15363 201 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 C10orf120Q5SQS8 335 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 AGGF1Q8N302 714 aaeCLIP23.23■■□□□ 1.31
CDX1-201ENST00000231656 MCUQ8NE86 351 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 GDPD5Q8WTR4 605 aa23.23■■□□□ 1.31
CDX1-201ENST00000231656 SERPINB11Q96P15 392 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms