RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 CPXM1Q96SM3 734 aa9.69□□□□□ -0.86
YBX3-218ENST00000546298 BTBD1Q9H0C5 482 aa9.69□□□□□ -0.86
YBX3-218ENST00000546298 NUCKS1Q9H1E3 243 aaKnown RBP9.69□□□□□ -0.86
YBX3-218ENST00000546298 MIR1-1HGQ9H1L0 117 aa9.69□□□□□ -0.86
YBX3-218ENST00000546298 SGK2Q9HBY8 427 aa9.69□□□□□ -0.86
YBX3-218ENST00000546298 CD93Q9NPY3 652 aa9.69□□□□□ -0.86
YBX3-218ENST00000546298 DDIT4Q9NX09 232 aa9.69□□□□□ -0.86
YBX3-218ENST00000546298 RRN3Q9NYV6 651 aa9.69□□□□□ -0.86
YBX3-218ENST00000546298 SPAG17Q6Q759 2223 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 TARSL2A2RTX5 802 aaKnown RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 KCNJ18B7U540 433 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 BCAT2O15382 392 aaPredicted RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 IGLV3-25P01717 112 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 TPM2P07951 284 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 EEF1GP26641 437 aaKnown RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 CSKP41240 450 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 RPS14P62263 151 aaKnown RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 SLC6A3Q01959 620 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 APBA1Q02410 837 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 RAPGEF1Q13905 1077 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 ARID5BQ14865 1188 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 DPCR1Q3MIW9 517 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 PITRM1Q5JRX3 1037 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 RAP1GAP2Q684P5 730 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 LRSAM1Q6UWE0 723 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 CLEC17AQ6ZS10 378 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 USP30Q70CQ3 517 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 SLC26A9Q7LBE3 791 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 FAM124AQ86V42 546 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 CACUL1Q86Y37 369 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 PASD1Q8IV76 773 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 FAM71AQ8IYT1 594 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 CFAP52Q8N1V2 620 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 ZNF366Q8N895 744 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 TMEM35BQ8NCS4 154 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 MSANTD4Q8NCY6 345 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 C1orf131Q8NDD1 294 aaKnown RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 ZNF397Q8NF99 534 aaPredicted RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 WFDC5Q8TCV5 224 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 GANCQ8TET4 914 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 SIX2Q9NPC8 291 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 DNAAF2Q9NVR5 837 aaKnown RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 STAP1Q9ULZ2 295 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 ERVW-1Q9UQF0 538 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 PAXBP1Q9Y5B6 917 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 CNOT1A5YKK6 2376 aaKnown RBP9.68□□□□□ -0.86
YBX3-218ENST00000546298 MYOFQ9NZM1 2061 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 CFAP54Q96N23 3096 aa9.68□□□□□ -0.86
YBX3-218ENST00000546298 TPRP12270 2363 aaKnown RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 SYNJ2BP-COX16A0A087WUM0 186 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 EDDM13A0A1B0GTR0 161 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 A0A1B0GVM2 712 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 TCAF2A6NFQ2 919 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 DAB1O75553 588 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 SEMA4FO95754 770 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 CER1O95813 267 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 NOS2P35228 1153 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 CLCN1P35523 988 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 SCNN1AP37088 669 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 SIM1P81133 766 aaPredicted RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 ECT2LQ008S8 904 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 FOXC1Q12948 553 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 NME3Q13232 169 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 EIF4EBP2Q13542 120 aaPredicted RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 KCNJ12Q14500 433 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 DRAP1Q14919 205 aaPredicted RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 TAF5Q15542 800 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 TEAD4Q15561 434 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 ST3GAL2Q16842 350 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 ACBD5Q5T8D3 534 aaPredicted RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 KLHDC7AQ5VTJ3 777 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 FBXL22Q6P050 247 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 SND1Q7KZF4 910 aaKnown RBP eCLIP9.67□□□□□ -0.86
YBX3-218ENST00000546298 PIP4P1Q86T03 277 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 SLC47A2Q86VL8 602 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 ZCCHC9Q8N567 271 aaKnown RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 SNX19Q92543 992 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 RSPH9Q9H1X1 276 aaPredicted RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 OSGEPQ9NPF4 335 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 FSCN3Q9NQT6 498 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 COX16Q9P0S2 106 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 EIF2B4Q9UI10 523 aaKnown RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 XPO7Q9UIA9 1087 aaKnown RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 INTS6Q9UL03 887 aaKnown RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 TPX2Q9ULW0 747 aaKnown RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 PCDHB9Q9Y5E1 797 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 GON4LQ3T8J9 2241 aa9.67□□□□□ -0.86
YBX3-218ENST00000546298 MYO18AQ92614 2054 aaKnown RBP9.67□□□□□ -0.86
YBX3-218ENST00000546298 USP34Q70CQ2 3546 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.66□□□□□ -0.86
YBX3-218ENST00000546298 GOLGA6L22H0YM25 854 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 M0QYT0 321 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 SIN3BO75182 1162 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 GRAP2O75791 330 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 TRIM16O95361 564 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 LSM8O95777 96 aaKnown RBP9.66□□□□□ -0.86
YBX3-218ENST00000546298 F9P00740 461 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 ERBB2P04626 1255 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 CD59P13987 128 aa9.66□□□□□ -0.86
YBX3-218ENST00000546298 UCHL3P15374 230 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms