RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 UBL4BQ8N7F7 174 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SLC35F5Q8WV83 523 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 ING5Q8WYH8 240 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 HERVK_113Q902F9 699 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 PWWP2AQ96N64 755 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 LRRC37BQ96QE4 947 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 VCX3BQ9H321 246 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 VCX3AQ9NNX9 186 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SLCO1B3Q9NPD5 702 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 RNF14Q9UBS8 474 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 MTRF1LQ9UGC7 380 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 XIRP2A4UGR9 3374 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 GOLGA8RI6L899 631 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 XPO1O14980 1071 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 KRT36O76013 467 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SEC24AO95486 1093 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 STAU1O95793 577 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 PGFP49763 221 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TAS2R40P59535 323 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SLC6A3Q01959 620 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 C1QBPQ07021 282 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 CALCOCO2Q13137 446 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SNX30Q5VWJ9 437 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 BSPRYQ5W0U4 402 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 RWDD4Q6NW29 188 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TAOK1Q7L7X3 1001 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SYCE1Q8N0S2 351 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 C4orf33Q8N1A6 199 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 KCTD6Q8NC69 237 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TSPAN18Q96SJ8 248 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 KLF6Q99612 283 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SYT11Q9BT88 431 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SHCBP1LQ9BZQ2 653 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TLE6Q9H808 572 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 PCDHGC3Q9UN70 934 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TTLL3Q9Y4R7 772 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 ARHGAP42A6NI28 874 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TRDMT1O14717 391 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 FGFR3P22607 806 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 DNAJB1P25685 340 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 NRIP1P48552 1158 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 YWHAZP63104 245 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 MPP3Q13368 585 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SEL1L2Q5TEA6 688 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 PHF13Q86YI8 300 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 PHC3Q8NDX5 983 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 SCG3Q8WXD2 468 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TBCBQ99426 244 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 PLVAPQ9BX97 442 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 TLR9Q9NR96 1032 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 CNTN6Q9UQ52 1028 aa8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 RBMX2Q9Y388 322 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-209ENST00000509277 OR6C75A6NL08 312 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 MAGEB3O15480 346 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 LTFP02788 710 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 C8AP07357 584 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 EPCAMP16422 314 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 YWHAQP27348 245 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 GALK1P51570 392 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 CDH6P55285 790 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 CBX2Q14781 532 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 GALNT15Q8N3T1 639 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 ZNF689Q96CS4 500 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 FAM210AQ96ND0 272 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SLITRK1Q96PX8 696 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 CYP2S1Q96SQ9 504 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 ATXN3LQ9H3M9 355 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 PRDM12Q9H4Q4 367 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 C10orf88Q9H8K7 445 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 CNOT10Q9H9A5 744 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 HCFC1R1Q9NWW0 138 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 UVRAGQ9P2Y5 699 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SAE1Q9UBE0 346 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 IP6K2Q9UHH9 426 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 HEY1Q9Y5J3 304 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 GABBR2O75899 941 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 GLUD1P00367 558 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 CKMP06732 381 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 ADH1AP07327 375 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 PEX5P50542 639 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 NTHL1P78549 312 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 CYP4F8P98187 520 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 HADHQ16836 314 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 ERMARDQ5T6L9 678 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 ARHGAP17Q68EM7 881 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 RFX6Q8HWS3 928 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 NUP93Q8N1F7 819 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 C9orf72Q96LT7 481 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SMG9Q9H0W8 520 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 NPHS2Q9NP85 383 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 ANLNQ9NQW6 1124 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 GDF3Q9NR23 364 aa8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 FAF1Q9UNN5 650 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-209ENST00000509277 MAP3K7O43318 606 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms