RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 LGI2Q8N0V4 545 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 ZNF557Q8N988 423 aaPredicted RBP13.76□□□□□ -0.21
CPSF4-210ENST00000469897 PCED1AQ9H1Q7 454 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 RSPH9Q9H1X1 276 aaPredicted RBP13.76□□□□□ -0.21
CPSF4-210ENST00000469897 TM9SF3Q9HD45 589 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 TJP2Q9UDY2 1190 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 SLCO3A1Q9UIG8 710 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 PCOLCE2Q9UKZ9 415 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 NCKAP1Q9Y2A7 1128 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 FNDC3AQ9Y2H6 1198 aaKnown RBP13.76□□□□□ -0.21
CPSF4-210ENST00000469897 SNX11Q9Y5W9 270 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 SPAG17Q6Q759 2223 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 CHD8Q9HCK8 2581 aa13.76□□□□□ -0.21
CPSF4-210ENST00000469897 TYW5A2RUC4 315 aaKnown RBP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 TTC34A8MYJ7 566 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 E5RJQ4 531 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 FGFR1OPO95684 399 aaKnown RBP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 TRUB2O95900 331 aaKnown RBP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 ASLP04424 464 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 FTH1P19P0C7X4 201 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 TACR2P21452 398 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 GNA15P30679 374 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 NUMBP49757 651 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 PITX1P78337 314 aaPredicted RBP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 NNTQ13423 1086 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 CDH18Q13634 790 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 HNRNPA1L2Q32P51 320 aaKnown RBP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 PITRM1Q5JRX3 1037 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 C9orf64Q5T6V5 341 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 ZNF776Q68DI1 518 aaPredicted RBP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 DBX2Q6ZNG2 339 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 BEND5Q7L4P6 421 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 APCDD1Q8J025 514 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 WDTC1Q8N5D0 677 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 RHBDD1Q8TEB9 315 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 MED15Q96RN5 788 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 NEUROG2Q9H2A3 272 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 THAP9Q9H5L6 903 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 FBRSQ9HAH7 460 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 POPDC2Q9HBU9 364 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 SGK2Q9HBY8 427 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 FBXL12Q9NXK8 326 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 KIAA1522Q9P206 1035 aaPredicted RBP13.75□□□□□ -0.21
CPSF4-210ENST00000469897 ERVW-1Q9UQF0 538 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 ANKRD6Q9Y2G4 727 aa13.75□□□□□ -0.21
CPSF4-210ENST00000469897 SYNJ2BP-COX16A0A087WUM0 186 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 TMEM8BA6NDV4 472 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 SRRM3A6NNA2 597 aaPredicted RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 BECN2A8MW95 431 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 RNASEH1O60930 286 aaKnown RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 CER1O95813 267 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 APOEP02649 317 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 CD27P26842 260 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 GALCP54803 685 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 TEAD4Q15561 434 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 TTC31Q49AM3 519 aaPredicted RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 KCNT1Q5JUK3 1230 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 LAYNQ6UX15 382 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 ENOSF1Q7L5Y1 443 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 CHSY1Q86X52 802 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 MMAAQ8IVH4 418 aaKnown RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 ADAMTS14Q8WXS8 1223 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 ZCCHC14Q8WYQ9 949 aaKnown RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 BTN2A3PQ96KV6 586 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 RPL10LQ96L21 214 aaKnown RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 FAM129BQ96TA1 746 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 PABPC3Q9H361 631 aaKnown RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 OSGEPQ9NPF4 335 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 COX16Q9P0S2 106 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 KIAA1468Q9P260 1216 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 SERGEFQ9UGK8 458 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 SLC12A6Q9UHW9 1150 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 RWDD2AQ9UIY3 292 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 CEP83Q9Y592 693 aa13.74□□□□□ -0.21
CPSF4-210ENST00000469897 CNOT1A5YKK6 2376 aaKnown RBP13.74□□□□□ -0.21
CPSF4-210ENST00000469897 A0A1W2PP55 124 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 TARSL2A2RTX5 802 aaKnown RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 GOLGA8CPA6NN73 597 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 KCNU1A8MYU2 1149 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 MID1O15344 667 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 RNASEH2AO75792 299 aaKnown RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 LUC7L3O95232 432 aaKnown RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 MOCS3O95396 460 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 IGHV4-34P06331 123 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 SRPRAP08240 638 aaKnown RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 ZNF883P0CG24 379 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 SLC8A1P32418 973 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 ECT2LQ008S8 904 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 EIF4EBP2Q13542 120 aaPredicted RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 SUZ12Q15022 739 aaKnown RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 CST6Q15828 149 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 MEA1Q16626 185 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 PRAMEF14Q5SWL7 426 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 KIAA0895LQ68EN5 471 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 TRIM65Q6PJ69 517 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 GBP6Q6ZN66 633 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 USP30Q70CQ3 517 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 CIR1Q86X95 450 aaPredicted RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 PASD1Q8IV76 773 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms