RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TBC1D31Q96DN5 1066 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 C1orf74Q96LT6 269 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 CEP295NLQ96MC4 621 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 CYP4F11Q9HBI6 524 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 OLA1Q9NTK5 396 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 HSFX1Q9UBD0 423 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 YIPF1Q9Y548 306 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 F5H423 210 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-202ENST00000372405 EIF3HO15372 352 aaKnown RBP eCLIP14.17□□□□□ -0.141e-7■□□□□ 10
PTPRF-202ENST00000372405 URODP06132 367 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 NR1D1P20393 614 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 IFI35P80217 286 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-202ENST00000372405 CBLBQ13191 982 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 SEMA5AQ13591 1074 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 SKIDA1Q1XH10 827 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 BBS9Q3SYG4 887 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 MS4A13Q5J8X5 152 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 EMC10Q5UCC4 262 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 C4orf22Q6V702 233 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 CAPN12Q6ZSI9 719 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 ARHGEF18Q6ZSZ5 1173 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 PDZD4Q76G19 769 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-202ENST00000372405 PDIK1LQ8N165 341 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 ZSCAN18Q8TBC5 510 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-202ENST00000372405 ROPN1BQ9BZX4 212 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-202ENST00000372405 MCOLN1Q9GZU1 580 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 ROPN1Q9HAT0 212 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-202ENST00000372405 MPP6Q9NZW5 540 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 SEPT10Q9P0V9 454 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 CTNNAL1Q9UBT7 734 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 OBSL1O75147 1896 aa14.17□□□□□ -0.14
PTPRF-202ENST00000372405 SLC12A8A0AV02 714 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 NCAM2O15394 837 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 TCEA3O75764 348 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 FGF18O76093 207 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 FGBP02675 491 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 HMBSP08397 361 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 SLC2A3P11169 496 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 PTPN3P26045 913 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 GCAP28676 217 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 HTR7P34969 479 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 SERPINB6P35237 376 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 TUBP50607 506 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 MAGOHP61326 146 aaKnown RBP14.16□□□□□ -0.14
PTPRF-202ENST00000372405 FPGSQ05932 587 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 PPIGQ13427 754 aaKnown RBP eCLIP14.16□□□□□ -0.143e-7■■□□□ 11.9
PTPRF-202ENST00000372405 TMEM240Q5SV17 173 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 C6orf118Q5T5N4 469 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 SNX30Q5VWJ9 437 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 ARHGAP36Q6ZRI8 547 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 FBXO36Q8NEA4 188 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 TTC25Q96NG3 672 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 GORASP1Q9BQQ3 440 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 ZBP1Q9H171 429 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 TEX264Q9Y6I9 313 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 ZNF840PA6NDX5 716 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 TEX28O15482 410 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 FGF10O15520 208 aaPredicted RBP14.16□□□□□ -0.14
PTPRF-202ENST00000372405 OPHN1O60890 802 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 TPSB2P20231 275 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 SSTR1P30872 391 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 ELK3P41970 407 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 GRIA1P42261 906 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 MAGEA3P43357 314 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 ATP1A2P50993 1020 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 ZBTB17Q13105 803 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 TPSAB1Q15661 275 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 KDM7AQ6ZMT4 941 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 NLRP14Q86W24 1093 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 MCUQ8NE86 351 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 PYROXD1Q8WU10 500 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 MYRFLQ96LU7 910 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 PRDM10Q9NQV6 1147 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 EURLQ9NYK6 297 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 VANGL2Q9ULK5 521 aa14.16□□□□□ -0.14
PTPRF-202ENST00000372405 CHD7Q9P2D1 2997 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 APOEP02649 317 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 MX2P20592 715 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 PSMB4P28070 264 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 HPDP32754 393 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-202ENST00000372405 PPM1AP35813 382 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 KCNQ1P51787 676 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 SKOR1P84550 965 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 AFMIDQ63HM1 303 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 FIBCD1Q8N539 461 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 ZNF276Q8N554 614 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 CLP1Q92989 425 aaKnown RBP14.15□□□□□ -0.14
PTPRF-202ENST00000372405 MYEOVQ96EZ4 313 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 ZNF419Q96HQ0 510 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-202ENST00000372405 BTN2A3PQ96KV6 586 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 ZNF512Q96ME7 567 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-202ENST00000372405 PRMT1Q99873 361 aaKnown RBP14.15□□□□□ -0.14
PTPRF-202ENST00000372405 SLC39A8Q9C0K1 460 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 BRD8Q9H0E9 1235 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 NOL6Q9H6R4 1146 aaKnown RBP14.15□□□□□ -0.14
PTPRF-202ENST00000372405 CATSPERBQ9H7T0 1116 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 VPS37BQ9H9H4 285 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 PLAC1Q9HBJ0 212 aa14.15□□□□□ -0.14
PTPRF-202ENST00000372405 MRPL17Q9NRX2 175 aaKnown RBP14.15□□□□□ -0.14
PTPRF-202ENST00000372405 TMEM51Q9NW97 253 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms