RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 C1QTNF3Q9BXJ4 246 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 ABCG8Q9H221 673 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 HSD3B7Q9H2F3 369 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 MRPL44Q9H9J2 332 aaKnown RBP6.61□□□□□ -1.35
VPS29-210ENST00000552130 LTB4R2Q9NPC1 389 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 GIMAP4Q9NUV9 329 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 RIC8BQ9NVN3 520 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 ARHGAP20Q9P2F6 1191 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 RGS17Q9UGC6 210 aaPredicted RBP6.61□□□□□ -1.35
VPS29-210ENST00000552130 LIMA1Q9UHB6 759 aaKnown RBP6.61□□□□□ -1.35
VPS29-210ENST00000552130 JRKLQ9Y4A0 524 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 PMF1-BGLAPU3KQ54 211 aa6.61□□□□□ -1.35
VPS29-210ENST00000552130 A0A0G2JPF8 293 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A27PA6NNH2 459 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 HNRNPCL3B7ZW38 293 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 DNM1LO00429 736 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 TGFB1I1O43294 461 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 CCP110O43303 1012 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 PSMD10O75832 226 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 TRIM16O95361 564 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 NTSR2O95665 410 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 HNRNPCL4P0DMR1 293 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 GAAP10253 952 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 CKBP12277 381 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 ARF4P18085 180 aaPredicted RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 CCNA2P20248 432 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 FPR2P25090 351 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 SERPINA4P29622 427 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 ADSSP30520 456 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 CORO7P57737 925 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 GMFBP60983 142 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 TGFB2P61812 414 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 BEX3Q00994 111 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 SLC6A3Q01959 620 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 TRADDQ15628 312 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 CHRNA2Q15822 529 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 CCDC40Q4G0X9 1142 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 SLFN12LQ6IEE8 588 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 FAM180AQ6UWF9 173 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 C15orf52Q6ZUT6 534 aaKnown RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 KCTD1Q719H9 257 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 GAREM2Q75VX8 874 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 TMEM200AQ86VY9 491 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A1Q86YD7 464 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 MAML2Q8IZL2 1156 aaPredicted RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 MPP5Q8N3R9 675 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 RTL3Q8N8U3 475 aaKnown RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 SYT2Q8N9I0 419 aaPredicted RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 POC5Q8NA72 575 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 DRAXINQ8NBI3 349 aaPredicted RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 ARRDC4Q8NCT1 418 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 CNNM3Q8NE01 707 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 IFI44Q8TCB0 444 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 KCNE4Q8WWG9 221 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 ASB15Q8WXK1 588 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 MRPS27Q92552 414 aaKnown RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 TUBGCP3Q96CW5 907 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 PERPQ96FX8 193 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 NR1H4Q96RI1 486 aaPredicted RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 FAM118BQ9BPY3 351 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 PHF7Q9BWX1 381 aaPredicted RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 ACPTQ9BZG2 426 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 MANSC1Q9H8J5 431 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 RXFP1Q9HBX9 757 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 CD93Q9NPY3 652 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 DDX18Q9NVP1 670 aaKnown RBP6.6□□□□□ -1.35
VPS29-210ENST00000552130 FETUBQ9UGM5 382 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 KCNE2Q9Y6J6 123 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 SESN1Q9Y6P5 492 aa6.6□□□□□ -1.35
VPS29-210ENST00000552130 ARHGEF37A1IGU5 675 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A18PA6NE21 464 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A16PA6NEW6 464 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A9PA6NNJ1 464 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A5PA8MXJ8 464 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 LACTBL1A8MY62 500 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 TMEM233B4DJY2 109 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 GPR89AB7ZAQ6 455 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 PEX12O00623 359 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 FGF10O15520 208 aaPredicted RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 TNFSF14O43557 240 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 SLC25A17O43808 307 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 RASSF9O75901 435 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 DDHD2O94830 711 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 C22orf31O95567 290 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 PRLP01236 227 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A15PP0C7V4 464 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 SUPT20HL2P0C7V6 817 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 FAM90A14PP0C7W9 464 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 GPR89BP0CG08 455 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 XRCC6P12956 609 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS29-210ENST00000552130 MTIF2P46199 727 aaKnown RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 ZNF81P51508 661 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 CUL2Q13617 745 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 SUPT20HL1Q3ZLR7 823 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 TRIM60Q495X7 471 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 ZRANB3Q5FWF4 1079 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 ATXN7L2Q5T6C5 722 aaPredicted RBP6.59□□□□□ -1.35
VPS29-210ENST00000552130 DCAF12L1Q5VU92 463 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 LIPMQ5VYY2 423 aa6.59□□□□□ -1.35
VPS29-210ENST00000552130 BTBD8Q5XKL5 378 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms