RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FGF11Q92914 225 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 INTS4Q96HW7 963 aaKnown RBP17.63■□□□□ 0.41
VPS29-204ENST00000548259 SLC6A18Q96N87 628 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 OMDQ99983 421 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 RSPH9Q9H1X1 276 aaPredicted RBP17.63■□□□□ 0.41
VPS29-204ENST00000548259 PABPC3Q9H361 631 aaKnown RBP17.63■□□□□ 0.41
VPS29-204ENST00000548259 KNTC1P50748 2209 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 IRAK2O43187 625 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 ASLP04424 464 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 IGHV4-34P06331 123 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 PDIA4P13667 645 aaKnown RBP17.62■□□□□ 0.41
VPS29-204ENST00000548259 PLA2G2AP14555 144 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 RAB41Q5JT25 222 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 KCNT1Q5JUK3 1230 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 EID2Q8N6I1 236 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 ANKRD52Q8NB46 1076 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 OR2T34Q8NGX1 318 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 TMEM176AQ96HP8 235 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 STOML2Q9UJZ1 356 aa17.62■□□□□ 0.41
VPS29-204ENST00000548259 MYH10P35580 1976 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 C1QL1O75973 258 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 GCLMP48507 274 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 SLC11A2P49281 568 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 ACADVLP49748 655 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 GALCP54803 685 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 ENPEPQ07075 957 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 STK4Q13043 487 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 ARHGAP17Q68EM7 881 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 PM20D1Q6GTS8 502 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 NCEH1Q6PIU2 408 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 KIAA0907Q7Z7F0 614 aaPredicted RBP17.61■□□□□ 0.41
VPS29-204ENST00000548259 UNC45BQ8IWX7 931 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 CACTIN-AS1Q8N1I8 211 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 TAS1R2Q8TE23 839 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 SAP25Q8TEE9 199 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 CCDC47Q96A33 483 aaKnown RBP17.61■□□□□ 0.41
VPS29-204ENST00000548259 DDX50Q9BQ39 737 aaKnown RBP17.61■□□□□ 0.41
VPS29-204ENST00000548259 KCTD10Q9H3F6 313 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 APOBEC3GQ9HC16 384 aaKnown RBP17.61■□□□□ 0.41
VPS29-204ENST00000548259 HESX1Q9UBX0 185 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 FZD4Q9ULV1 537 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 RAI2Q9Y5P3 530 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 BPTFQ12830 3046 aa17.61■□□□□ 0.41
VPS29-204ENST00000548259 CKAP5Q14008 2032 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 TLX3O43711 291 aaPredicted RBP17.6■□□□□ 0.41
VPS29-204ENST00000548259 MAGEC1O60732 1142 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 RNASEH2AO75792 299 aaKnown RBP17.6■□□□□ 0.41
VPS29-204ENST00000548259 RPL13P26373 211 aaKnown RBP17.6■□□□□ 0.41
VPS29-204ENST00000548259 ME1P48163 572 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 CCR5P51681 352 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 DNAJC3Q13217 504 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 CST6Q15828 149 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 PRAMEF14Q5SWL7 426 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 FBXL19Q6PCT2 694 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 SIX6OS1Q8N1H7 587 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 KDM1BQ8NB78 822 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 ORAI3Q9BRQ5 295 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 ULBP1Q9BZM6 244 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 TMEM8AQ9HCN3 771 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 ABCC13Q9NSE7 274 aa17.6■□□□□ 0.41
VPS29-204ENST00000548259 TBL1XO60907 577 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 CKMT2P17540 419 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 GLDCP23378 1020 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 EPHA8P29322 1005 aaPredicted RBP17.59■□□□□ 0.41
VPS29-204ENST00000548259 GTF2H1P32780 548 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 CFHR1Q03591 330 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 HNRNPA1L2Q32P51 320 aaKnown RBP17.59■□□□□ 0.41
VPS29-204ENST00000548259 HS1BP3Q53T59 392 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 TAF1BQ53T94 588 aaPredicted RBP17.59■□□□□ 0.41
VPS29-204ENST00000548259 BROXQ5VW32 411 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 BSPRYQ5W0U4 402 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 NUGGCQ68CJ6 796 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 MFN1Q8IWA4 741 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 FAM186BQ8IYM0 893 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 ZNF843Q8N446 348 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 KIAA0895Q8NCT3 520 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 TSC1Q92574 1164 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 SERAC1Q96JX3 654 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 MMRN2Q9H8L6 949 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 ERVMER34-1Q9H9K5 563 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 CISHQ9NSE2 258 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 ADAMTS1Q9UHI8 967 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 CLCA2Q9UQC9 943 aa17.59■□□□□ 0.41
VPS29-204ENST00000548259 A0A1W2PP55 124 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 TARSL2A2RTX5 802 aaKnown RBP17.58■□□□□ 0.4
VPS29-204ENST00000548259 J3QKU1 62 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 TLR4O00206 839 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 CBX4O00257 560 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 XPO1O14980 1071 aaKnown RBP17.58■□□□□ 0.4
VPS29-204ENST00000548259 MID1O15344 667 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 STX10O60499 249 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 MOCS3O95396 460 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 MYL1P05976 194 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 TRIM49P0CI25 452 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 TRIM49CP0CI26 452 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 NR2F2P24468 414 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 PSMC2P35998 433 aaKnown RBP17.58■□□□□ 0.4
VPS29-204ENST00000548259 UCNP55089 124 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 E2F1Q01094 437 aa17.58■□□□□ 0.4
VPS29-204ENST00000548259 C1orf220Q5T0J3 134 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms