RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 DGKGP49619 791 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 ADKP55263 362 aaKnown RBP13.86□□□□□ -0.19
VPS28-210ENST00000529182 GSCP56915 257 aaPredicted RBP13.86□□□□□ -0.19
VPS28-210ENST00000529182 ATP11AP98196 1134 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 DEUP1Q05D60 604 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 TRIM14Q14142 442 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 C15orf59Q2T9L4 293 aaPredicted RBP13.86□□□□□ -0.19
VPS28-210ENST00000529182 SLC25A52Q3SY17 297 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 CCDC14Q49A88 953 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 FBXO43Q4G163 708 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 C2orf27AQ580R0 203 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 C10orf76Q5T2E6 689 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 SH3PXD2AQ5TCZ1 1133 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 PIK3R6Q5UE93 754 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 DNAJC24Q6P3W2 148 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 WDR59Q6PJI9 974 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 ARCQ7LC44 396 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 CHSY1Q86X52 802 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 SPEM1Q8N4L4 309 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 ATP6V0D2Q8N8Y2 350 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 BTN2A3PQ96KV6 586 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.86□□□□□ -0.19
VPS28-210ENST00000529182 TMPRSS4Q9NRS4 437 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 FAM86C1Q9NVL1 165 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 RRN3Q9NYV6 651 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 STIM2Q9P246 746 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 ADAMTS1Q9UHI8 967 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 FBXO10Q9UK96 956 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 A0A0A0MRY4 1105 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 C2CD4BA6NLJ0 364 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 I6L893 689 aaPredicted RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 TBL1XO60907 577 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 FTLP02792 175 aaPredicted RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 SLC2A3P11169 496 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 CHRM1P11229 460 aaPredicted RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 GZMAP12544 262 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 PDGFRAP16234 1089 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 TACR2P21452 398 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 TIE1P35590 1138 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 CXCR3P49682 368 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 PTPN5P54829 565 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 RPL7AP62424 266 aaKnown RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 RPS24P62847 133 aaKnown RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 CSTF1Q05048 431 aaKnown RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 PPP2R5DQ14738 602 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 CDO1Q16878 200 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 MS4A13Q5J8X5 152 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 BNIPLQ7Z465 357 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 FAM131BQ86XD5 332 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 LGI2Q8N0V4 545 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 CFAP52Q8N1V2 620 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 WFDC5Q8TCV5 224 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 USP33Q8TEY7 942 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 PGAP3Q96FM1 320 aaPredicted RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 MCEEQ96PE7 176 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 DNAJC7Q99615 494 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 PRRX2Q99811 253 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 PRMT1Q99873 361 aaKnown RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 TKTL2Q9H0I9 626 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 KCNH6Q9H252 994 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 PRMT8Q9NR22 394 aaPredicted RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 SLC12A6Q9UHW9 1150 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 HCN2Q9UL51 889 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 SNX10Q9Y5X0 201 aa13.85□□□□□ -0.19
VPS28-210ENST00000529182 BZW2Q9Y6E2 419 aaKnown RBP13.85□□□□□ -0.19
VPS28-210ENST00000529182 A0A087X0T9 212 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 SIGLEC16A6NMB1 481 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 MFAP3LO75121 409 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 RTN2O75298 545 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 PAGE1O75459 146 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 FAM228BP0C875 321 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 SP9P0CG40 484 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 GPD1P21695 349 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 SDC4P31431 198 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 HNRNPH3P31942 346 aaKnown RBP13.84□□□□□ -0.19
VPS28-210ENST00000529182 RDXP35241 583 aaKnown RBP13.84□□□□□ -0.19
VPS28-210ENST00000529182 EIF4A3P38919 411 aaKnown RBP13.84□□□□□ -0.19
VPS28-210ENST00000529182 TNFRSF4P43489 277 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 KIR2DL1P43626 348 aaPredicted RBP13.84□□□□□ -0.19
VPS28-210ENST00000529182 CXCL12P48061 93 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 CCR3P51677 355 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 ZNF75DP51815 510 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 TBX2Q13207 712 aaPredicted RBP13.84□□□□□ -0.19
VPS28-210ENST00000529182 GEN1Q17RS7 908 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 PPP1R15BQ5SWA1 713 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 SND1Q7KZF4 910 aaKnown RBP eCLIP13.84□□□□□ -0.19
VPS28-210ENST00000529182 C14orf80Q86SX3 495 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 CIR1Q86X95 450 aaPredicted RBP13.84□□□□□ -0.19
VPS28-210ENST00000529182 CCDC33Q8N5R6 958 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 ALLCQ8N6M5 410 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 OR8K1Q8NGG5 319 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 ZNF653Q96CK0 615 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 DDX50Q9BQ39 737 aaKnown RBP13.84□□□□□ -0.19
VPS28-210ENST00000529182 IER2Q9BTL4 223 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 SIK2Q9H0K1 926 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 WDCPQ9H6R7 721 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 ABHD10Q9NUJ1 306 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 ARHGEF38Q9NXL2 777 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 HS3ST4Q9Y661 456 aa13.84□□□□□ -0.19
VPS28-210ENST00000529182 CHURC1-FNTBB4DL54 471 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms