RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PGRMC2O15173 223 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 CST8O60676 142 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 TMCC2O75069 709 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ITGA2P17301 1181 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 PTPN4P29074 926 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 SNRNP35Q16560 246 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 CHRDL2Q6WN34 429 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 TRPV1Q8NER1 839 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 TMCO1Q9UM00 188 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 PTGISQ16647 500 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 SAMD4BQ5PRF9 694 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 WDR12Q9GZL7 423 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 TMEM8AQ9HCN3 771 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 A1CFQ9NQ94 594 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 DPP7Q9UHL4 492 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 CCNB2O95067 398 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 SLC2A4P14672 509 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ARFIP1P53367 373 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 IST1P53990 364 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 TXNRD1Q16881 649 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 DHRSXQ8N5I4 330 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 RASGEF1AQ8N9B8 481 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 GTF3C2Q8WUA4 911 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 KLHL32Q96NJ5 620 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 CCDC28BQ9BUN5 200 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 DDX18Q9NVP1 670 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 POTEHQ6S545 545 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 CCNI2Q6ZMN8 369 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 RASGRP2Q7LDG7 609 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 STRA8Q7Z7C7 330 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ZC3H10Q96K80 434 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ANKRD12Q6UB98 2062 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ARHGEF33A8MVX0 844 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 GNB5O14775 395 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 DHFRP00374 187 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 UNKQ9C0B0 810 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 PIF1Q9H611 641 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 MLXQ9UH92 298 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 SGTAO43765 313 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 MYBL2P10244 700 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 CACNB3P54284 484 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 OXCT1P55809 520 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 SPIDRQ14159 915 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 ATG14Q6ZNE5 492 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 ZNF214Q9UL59 606 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 GJA1P17302 382 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 EPHB2P29323 1055 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 ARID5BQ14865 1188 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 FAM187BQ17R55 369 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 RIPOR1Q6ZS17 1223 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 KCNH1O95259 989 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 H2AFXP16104 143 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 RFC5P40937 340 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 RENBPP51606 427 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 PAGE2BQ5JRK9 111 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 DEFB107AQ8IZN7 70 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 TBC1D13Q9NVG8 400 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 GGA3Q9NZ52 723 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 SSR3Q9UNL2 185 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 SHOC2Q9UQ13 582 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 INVSQ9Y283 1065 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 ZNF185O15231 689 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 SMTNL2Q2TAL5 461 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 WASHC2DQ5SRD0 308 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 BTBD9Q96Q07 612 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 TCF7L2Q9NQB0 619 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 FAM49BQ9NUQ9 324 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 CROTQ9UKG9 612 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 OPLAHO14841 1288 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 FARP2O94887 1054 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 NTSP30990 170 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 CRKLP46109 303 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 GALCP54803 685 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 GPSM2P81274 684 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 MFSD7Q6UXD7 560 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 SMIM5Q71RC9 77 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 OAFQ86UD1 273 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 TMEM159Q96B96 161 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 SLC9A8Q9Y2E8 581 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 CES1P23141 567 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 OR1G1P47890 313 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 SLC15A2Q16348 729 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 GDPD5Q8WTR4 605 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 DCUN1D5Q9BTE7 237 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 EPB41L1Q9H4G0 881 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 ST3GAL5Q9UNP4 418 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 NCKAP1Q9Y2A7 1128 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 TRIM64A6NGJ6 449 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 ALOX5P09917 674 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 TLX1P31314 330 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 AQP5P55064 265 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 TCAIMQ8N3R3 496 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 JMJD4Q9H9V9 463 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 CD248Q9HCU0 757 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 TRIM17Q9Y577 477 aa14.23□□□□□ -0.13
CCDC88A-201ENST00000263630 ITIH1P19827 911 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 KDM7AQ6ZMT4 941 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 GPALPP1Q8IXQ4 340 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 OSBP2Q969R2 916 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 CCSER1Q9C0I3 900 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms