RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 SEC13P55735 322 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 TCF15Q12870 199 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 FAM133BQ5BKY9 247 aaKnown RBP13.89□□□□□ -0.19
VPS28-210ENST00000529182 DGKKQ5KSL6 1271 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 ACAD10Q6JQN1 1059 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 SARM1Q6SZW1 724 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 C1orf210Q8IVY1 113 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 PHTF2Q8N3S3 785 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 CPXM2Q8N436 756 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 JOSD2Q8TAC2 188 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 MYEOVQ96EZ4 313 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 CFAP57Q96MR6 1250 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 PNKPQ96T60 521 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 TBCBQ99426 244 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 NPY6RQ99463 290 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 ARHGEF4Q9NR80 690 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 DNAJC17Q9NVM6 304 aaKnown RBP13.89□□□□□ -0.19
VPS28-210ENST00000529182 WDR35Q9P2L0 1181 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 STOML2Q9UJZ1 356 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 CLEC4EQ9ULY5 219 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 MYO15AQ9UKN7 3530 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 H0Y858 1186 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 K7EQS6 105 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 GFRA2O00451 464 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 CACNG3O60359 315 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 KAT7O95251 611 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 LATS1O95835 1130 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 PENKP01210 267 aaPredicted RBP13.88□□□□□ -0.19
VPS28-210ENST00000529182 APOEP02649 317 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 CALB1P05937 261 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 HOXC13P31276 330 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 GBP1P32455 592 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 EIF2DP41214 584 aaKnown RBP13.88□□□□□ -0.19
VPS28-210ENST00000529182 MAGEA9P43362 315 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 SLC11A2P49281 568 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 ANGPT1Q15389 498 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 ADGRF1Q5T601 910 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 GRAMD4Q6IC98 578 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 MCOLN2Q8IZK6 566 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 MAML2Q8IZL2 1156 aaPredicted RBP13.88□□□□□ -0.19
VPS28-210ENST00000529182 DDI1Q8WTU0 396 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 SYN2Q92777 582 aaPredicted RBP13.88□□□□□ -0.19
VPS28-210ENST00000529182 RNF34Q969K3 372 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 EXOC4Q96A65 974 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 IQCDQ96DY2 449 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 XPO6Q96QU8 1125 aaKnown RBP13.88□□□□□ -0.19
VPS28-210ENST00000529182 TRIM5Q9C035 493 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 NUCKS1Q9H1E3 243 aaKnown RBP13.88□□□□□ -0.19
VPS28-210ENST00000529182 ZDHHC4Q9NPG8 344 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 PIGVQ9NUD9 493 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 POLR3BQ9NW08 1133 aaPredicted RBP13.88□□□□□ -0.19
VPS28-210ENST00000529182 DEC1Q9P2X7 70 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 STAP1Q9ULZ2 295 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 CACNA1IQ9P0X4 2223 aa13.88□□□□□ -0.19
VPS28-210ENST00000529182 TCRBV5S1A1TA0A578 114 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.87□□□□□ -0.19
VPS28-210ENST00000529182 ATMINO43313 823 aaPredicted RBP13.87□□□□□ -0.19
VPS28-210ENST00000529182 LAMTOR5O43504 91 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 CYBBP04839 570 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 APODP05090 189 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 CISD3P0C7P0 127 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 RRM1P23921 792 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 HOXD9P28356 352 aaPredicted RBP13.87□□□□□ -0.19
VPS28-210ENST00000529182 CCR1P32246 355 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 GRIA2P42262 883 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 NUBP1P53384 320 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 SATB1Q01826 763 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 C1QBPQ07021 282 aaKnown RBP13.87□□□□□ -0.19
VPS28-210ENST00000529182 MPPE1Q53F39 396 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 RAB6CQ53S08 254 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 EMC10Q5UCC4 262 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 RAP1GAP2Q684P5 730 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 TSSK4Q6SA08 328 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 TMC6Q7Z403 805 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 SYNPOQ8N3V7 929 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 TERB1Q8NA31 727 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 C3orf20Q8ND61 904 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 RPLP0P6Q8NHW5 317 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 RXFP2Q8WXD0 754 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 NT5C3BQ969T7 300 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 AZIN2Q96A70 460 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 TMA16Q96EY4 203 aaKnown RBP13.87□□□□□ -0.19
VPS28-210ENST00000529182 PRICKLE1Q96MT3 831 aaPredicted RBP13.87□□□□□ -0.19
VPS28-210ENST00000529182 SELENOOQ9BVL4 669 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 RAB6CQ9H0N0 254 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 ANLNQ9NQW6 1124 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS28-210ENST00000529182 ARHGAP20Q9P2F6 1191 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 ATG2BQ96BY7 2078 aa13.87□□□□□ -0.19
VPS28-210ENST00000529182 VPS13AQ96RL7 3174 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 KIAA1549LQ6ZVL6 1849 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 TBC1D3BA6NDS4 549 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 KCNU1A8MYU2 1149 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 PRRT4C9JH25 899 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 ADCY5O95622 1261 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 SERPING1P05155 500 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 KRT3P12035 628 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 ABCB4P21439 1286 aa13.86□□□□□ -0.19
VPS28-210ENST00000529182 RFC1P35251 1148 aaPredicted RBP13.86□□□□□ -0.19
VPS28-210ENST00000529182 GGCXP38435 758 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms