RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 EML5Q05BV3 1969 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 WDR87Q6ZQQ6 2873 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 FANCMQ8IYD8 2048 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ITIH6Q6UXX5 1313 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 GOLGA8SH3BPF8 625 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 K7EQS6 105 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 IRAK2O43187 625 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ATMINO43313 823 aaPredicted RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 DAB1O75553 588 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 LSM8O95777 96 aaKnown RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 TRUB2O95900 331 aaKnown RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 HNRNPLP14866 589 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS35-206ENST00000565228 FERP16591 822 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 GGCXP38435 758 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 CLCN5P51795 746 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 SLC8A3P57103 927 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 YWHAZP63104 245 aaKnown RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 PLCB2Q00722 1185 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ZNF252P-AS1Q0IIN9 211 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ARID5BQ14865 1188 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 UBXN2BQ14CS0 331 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 PDGFRLQ15198 375 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ASIC2Q16515 512 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 FILIP1LQ4L180 1135 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 DCAF6Q58WW2 860 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ZC3H12AQ5D1E8 599 aaKnown RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 PPP1R15BQ5SWA1 713 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 EMC10Q5UCC4 262 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 RFWD3Q6PCD5 774 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 SARM1Q6SZW1 724 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 TPGS1Q6ZTW0 290 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 BEND5Q7L4P6 421 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 SLC26A9Q7LBE3 791 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 CACNA2D4Q7Z3S7 1137 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 C14orf80Q86SX3 495 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ERICH1Q86X53 443 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ZNF677Q86XU0 584 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 PHF13Q86YI8 300 aaPredicted RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 ARHGAP18Q8N392 663 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 BHMTQ93088 406 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 C18orf8Q96DM3 657 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 PRICKLE1Q96MT3 831 aaPredicted RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 TBCBQ99426 244 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 PHOX2BQ99453 314 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 NPY6RQ99463 290 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 DNAI2Q9GZS0 605 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 NUCKS1Q9H1E3 243 aaKnown RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 LMAN1LQ9HAT1 526 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 POPDC2Q9HBU9 364 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 SPHK2Q9NRA0 654 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 PIGVQ9NUD9 493 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 ASNSD1Q9NWL6 643 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 THG1LQ9NWX6 298 aaKnown RBP9.61□□□□□ -0.87
VPS35-206ENST00000565228 STOML2Q9UJZ1 356 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 MYO6Q9UM54 1294 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 SH3BP1Q9Y3L3 701 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 DAAM1Q9Y4D1 1078 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 DOCK4Q8N1I0 1966 aa9.61□□□□□ -0.87
VPS35-206ENST00000565228 MUC22E2RYF6 1773 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 TMCO5BA8MYB1 307 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 KCNU1A8MYU2 1149 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 HOXC11O43248 304 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 TSPAN3O60637 253 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 ADCY5O95622 1261 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 PENKP01210 267 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 TDGF1P13385 188 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 RRM1P23921 792 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 KPNA1P52294 538 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 MLLT6P55198 1093 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 ADKP55263 362 aaKnown RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 RNASE9P60153 205 aaKnown RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 RPL7AP62424 266 aaKnown RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 DMWDQ09019 674 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 MTAPQ13126 283 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 C15orf59Q2T9L4 293 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 ASTE1Q2TB18 679 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 CCDC14Q49A88 953 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 PIK3R6Q5UE93 754 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 SFMBT2Q5VUG0 894 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 TMEM215Q68D42 235 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 RNF43Q68DV7 783 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 ACAD10Q6JQN1 1059 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 CC2D1AQ6P1N0 951 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 TSSK4Q6SA08 328 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 ZNF852Q6ZMS4 543 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 RSRC2Q7L4I2 434 aaKnown RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 RALGPS2Q86X27 583 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 CPNE8Q86YQ8 564 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 ZNF683Q8IZ20 524 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 MCOLN2Q8IZK6 566 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 ARFGAP1Q8N6T3 406 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 KIAA1958Q8N8K9 716 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 CSGALNACT1Q8TDX6 532 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 RNF139Q8WU17 664 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 ATP2A3Q93084 1043 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 LMLNQ96KR4 655 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 CFAP57Q96MR6 1250 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 CHP1Q99653 195 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 PRMT1Q99873 361 aaKnown RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 EDEM3Q9BZQ6 932 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms