RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 UBALD2Q8IYN6 164 aa22.57■■□□□ 1.2
SNX1-206ENST00000559389 IRF7Q92985 503 aa22.57■■□□□ 1.2
SNX1-206ENST00000559389 ARHGEF26Q96DR7 871 aa22.57■■□□□ 1.2
SNX1-206ENST00000559389 DCLK3Q9C098 648 aa22.57■■□□□ 1.2
SNX1-206ENST00000559389 HPS4Q9NQG7 708 aa22.57■■□□□ 1.2
SNX1-206ENST00000559389 DUS2Q9NX74 493 aaKnown RBP22.57■■□□□ 1.2
SNX1-206ENST00000559389 TBC1D14Q9P2M4 693 aa22.57■■□□□ 1.2
SNX1-206ENST00000559389 MYO1AQ9UBC5 1043 aa22.57■■□□□ 1.2
SNX1-206ENST00000559389 H2AFZP0C0S5 128 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 PDGFRAP16234 1089 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 GBP1P32455 592 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 EML3Q32P44 896 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 TRIM68Q6AZZ1 485 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 DCUN1D2Q6PH85 259 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 RAD9BQ6WBX8 426 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 H2AFVQ71UI9 128 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 CTNNBL1Q8WYA6 563 aaPredicted RBP22.56■■□□□ 1.2
SNX1-206ENST00000559389 OTUB2Q96DC9 234 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 MRPL47Q9HD33 250 aaKnown RBP22.56■■□□□ 1.2
SNX1-206ENST00000559389 TRPV5Q9NQA5 729 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 PIGVQ9NUD9 493 aa22.56■■□□□ 1.2
SNX1-206ENST00000559389 EIF3CLB5ME19 914 aaKnown RBP22.55■■□□□ 1.2
SNX1-206ENST00000559389 NDUFA10O95299 355 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 LATS1O95835 1130 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 TMEM253P0C7T8 217 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 ARSAP15289 507 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 RDXP35241 583 aaKnown RBP22.55■■□□□ 1.2
SNX1-206ENST00000559389 HARS2P49590 506 aaKnown RBP22.55■■□□□ 1.2
SNX1-206ENST00000559389 ZNF143P52747 638 aaPredicted RBP22.55■■□□□ 1.2
SNX1-206ENST00000559389 PFKPQ01813 784 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 OGDHQ02218 1023 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 DEUP1Q05D60 604 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 NME3Q13232 169 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 CCDC14Q49A88 953 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 C10orf76Q5T2E6 689 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 ANP32BQ92688 251 aaKnown RBP22.55■■□□□ 1.2
SNX1-206ENST00000559389 ATP2A3Q93084 1043 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 EIF3CQ99613 913 aaKnown RBP22.55■■□□□ 1.2
SNX1-206ENST00000559389 EBF3Q9H4W6 596 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 AGO1Q9UL18 857 aaKnown RBP22.55■■□□□ 1.2
SNX1-206ENST00000559389 ZNF510Q9Y2H8 683 aa22.55■■□□□ 1.2
SNX1-206ENST00000559389 MYO10Q9HD67 2058 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 SYNJ2BP-COX16A0A087WUM0 186 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 TMEM191CA6NGB0 347 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 DCXO43602 365 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 ENDOD1O94919 500 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 F9P00740 461 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 APOEP02649 317 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 ATP11AP98196 1134 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 TNK2Q07912 1038 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 ZNF252P-AS1Q0IIN9 211 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 PPP2R5DQ14738 602 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 C15orf59Q2T9L4 293 aaPredicted RBP22.54■■□□□ 1.2
SNX1-206ENST00000559389 STRADAQ7RTN6 431 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 DENND1CQ8IV53 801 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 UNC45BQ8IWX7 931 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 FAM217AQ8IXS0 508 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 FNIP1Q8TF40 1166 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 PDLIM2Q96JY6 352 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 TRIM7Q9C029 511 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 LINC00597Q9H2U6 94 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 TMEM51Q9NW97 253 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 COX16Q9P0S2 106 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 STOML2Q9UJZ1 356 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 INTUQ9ULD6 942 aa22.54■■□□□ 1.2
SNX1-206ENST00000559389 EPN1Q9Y6I3 576 aaPredicted RBP22.54■■□□□ 1.2
SNX1-206ENST00000559389 CCP110O43303 1012 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 NFATC1O95644 943 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 SLC2A3P11169 496 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 CCR1P32246 355 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 CXCR3P49682 368 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 ZXDAP98168 799 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 CDO1Q16878 200 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 ZC3H12AQ5D1E8 599 aaKnown RBP22.53■■□□□ 1.2
SNX1-206ENST00000559389 CCDC112Q8NEF3 446 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 CENPIQ92674 756 aaPredicted RBP22.53■■□□□ 1.2
SNX1-206ENST00000559389 CNPY3Q9BT09 278 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 NUP85Q9BW27 656 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 COL25A1Q9BXS0 654 aaPredicted RBP22.53■■□□□ 1.2
SNX1-206ENST00000559389 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.53■■□□□ 1.2
SNX1-206ENST00000559389 GTSE1Q9NYZ3 720 aa22.53■■□□□ 1.2
SNX1-206ENST00000559389 CYP17A1P05093 508 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 ATXN1P54253 815 aaKnown RBP22.52■■□□□ 1.2
SNX1-206ENST00000559389 HDAC4P56524 1084 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 RUNX3Q13761 415 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 SPA17Q15506 151 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 BRMS1LQ5PSV4 323 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 SH3PXD2AQ5TCZ1 1133 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 CPXM2Q8N436 756 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 CPA6Q8N4T0 437 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 CSGALNACT1Q8TDX6 532 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 FAM172AQ8WUF8 416 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 AZIN2Q96A70 460 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 UVRAGQ9P2Y5 699 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 REXO2Q9Y3B8 237 aaKnown RBP22.52■■□□□ 1.2
SNX1-206ENST00000559389 PAXBP1Q9Y5B6 917 aa22.52■■□□□ 1.2
SNX1-206ENST00000559389 OTOL1A6NHN0 477 aaPredicted RBP22.51■■□□□ 1.19
SNX1-206ENST00000559389 KCNU1A8MYU2 1149 aa22.51■■□□□ 1.19
SNX1-206ENST00000559389 IPO7O95373 1038 aaKnown RBP22.51■■□□□ 1.19
SNX1-206ENST00000559389 MOCS2O96007 188 aaPredicted RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 255.4 ms