RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 RGS16O15492 202 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 TLR5O60602 858 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 KRT14P02533 472 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 SERPINF2P08697 491 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 TLX1P31314 330 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CENPPQ6IPU0 288 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 BBS7Q8IWZ6 715 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 OR10Q1Q8NGQ4 319 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 ASPSCR1Q9BZE9 553 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CRTAC1Q9NQ79 661 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 GDF3Q9NR23 364 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 TARSL2A2RTX5 802 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 A8MU76 341 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PRR5-ARHGAP8B1AHC4 643 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 KLHL41O60662 606 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PLGP00747 810 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 MPOP05164 745 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 STIP1P31948 543 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 ARL4CP56559 192 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 EIF3EP60228 445 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PTK6Q13882 451 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 NAA25Q14CX7 972 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP2A13Q16696 494 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 NDUFA9Q16795 377 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 IZUMO3Q5VZ72 239 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 RAP1GAP2Q684P5 730 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 USP53Q70EK8 1073 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 MIPOL1Q8TD10 442 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 FAM3CQ92520 227 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 FOXJ1Q92949 421 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 LMAN1LQ9HAT1 526 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP3A43Q9HB55 503 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 SYNPO2Q9UMS6 1093 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP2A7P20853 494 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 ELP6Q0PNE2 266 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 SPIDRQ14159 915 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 TRIM42Q8IWZ5 723 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 GBP7Q8N8V2 638 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 VANGL2Q9ULK5 521 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 TPH1P17752 444 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 TGM2P21980 687 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 DDX6P26196 483 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 GSTA3Q16772 222 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 C12orf76Q8N812 135 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 P2RY13Q9BPV8 354 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 TM6SF2Q9BZW4 377 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 RRN3Q9NYV6 651 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 GTF3C4Q9UKN8 822 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 LOC102724159A0A0B4J2E5 919 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 STAU1O95793 577 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 COPS2P61201 443 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 PWP2Q15269 919 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 RHOT1Q8IXI2 618 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 SLC2A14Q8TDB8 520 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 PRR11Q96HE9 360 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 LMAN2LQ9H0V9 348 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 IMP3Q9NV31 184 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 INO80Q9ULG1 1556 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 SLC38A8A6NNN8 435 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 VGLL3A8MV65 326 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 KLF8O95600 359 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 EIF4A3P38919 411 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 CLK2P49760 499 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 NAPEPLDQ6IQ20 393 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 MRNIPQ6NTE8 343 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 C15orf52Q6ZUT6 534 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 BEND7Q8N7W2 519 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 TMEM176AQ96HP8 235 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 USP29Q9HBJ7 922 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 TMEM51Q9NW97 253 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 GTF2IRD1Q9UHL9 959 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 ASB3Q9Y575 518 aa9.48□□□□□ -0.89
LIMCH1-202ENST00000381753 CDC42BPBQ9Y5S2 1711 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 EBAG9O00559 213 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 SYN3O14994 580 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 PTPN1P18031 435 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 RGS1Q08116 209 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 MARC1Q5VT66 337 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 NIPA1Q7RTP0 329 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 CENPSQ8N2Z9 138 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 MAP3K14Q99558 947 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ADH5P11766 374 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 PPARDQ03181 441 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 FSCBQ5H9T9 825 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 CBWD3Q5JTY5 395 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 CBWD5Q5RIA9 395 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP20A1Q6UW02 462 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 PRICKLE2Q7Z3G6 844 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 OXR1Q8N573 874 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 TRIB2Q92519 343 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ARMC7Q9H6L4 198 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 ZSCAN32Q9NX65 697 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 SUCOQ9UBS9 1254 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 MRPL42Q9Y6G3 142 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 IQANK1A0A1B0GTG1 560 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 TNFP01375 233 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 RPA3P35244 121 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 RFC1P35251 1148 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 BNC1Q01954 994 aa9.47□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP24A1Q07973 514 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms