RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 HEATR6Q6AI08 1181 aaKnown RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 CCDC81Q6ZN84 652 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 CDR2LQ86X02 465 aaPredicted RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 CDKL3Q8IVW4 592 aaPredicted RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 C12orf50Q8NA57 414 aaPredicted RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 MAML3Q96JK9 1138 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 PAFAH2Q99487 392 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 WWP1Q9H0M0 922 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 DHX35Q9H5Z1 703 aaKnown RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 XAB2Q9HCS7 855 aaKnown RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 POLMQ9NP87 494 aaPredicted RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 COQ4Q9Y3A0 265 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 PLCH1Q4KWH8 1693 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 PAPPAQ13219 1627 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 E2F3O00716 465 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 JAG1P78504 1218 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 OVGP1Q12889 678 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 IFRD2Q12894 506 aaPredicted RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 SMAD4Q13485 552 aaKnown RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 NBPF12Q5TAG4 269 aaPredicted RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 PHF13Q86YI8 300 aaPredicted RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 ZSWIM2Q8NEG5 633 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 APOBEC2Q9Y235 224 aaKnown RBP10.76□□□□□ -0.69
LIG1-220ENST00000601091 ATRNL1Q5VV63 1379 aa10.76□□□□□ -0.69
LIG1-220ENST00000601091 SNTNA6NMZ2 147 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SNPHO15079 494 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 DSG3P32926 999 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SERPINB6P35237 376 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 RFC1P35251 1148 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 GMPSP49915 693 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 RBP5P82980 135 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 TTLL4Q14679 1199 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 NR1D2Q14995 579 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 LRRC38Q5VT99 294 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 ZPBP2Q6X784 338 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 LRRC6Q86X45 466 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SEC14L1Q92503 715 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 NMD3Q96D46 503 aaKnown RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 FAM84AQ96KN4 292 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 FAM161BQ96MY7 647 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 TMEM237Q96Q45 408 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 ALPK1Q96QP1 1244 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 FRMD8Q9BZ67 464 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 PORCNQ9H237 461 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 TPK1Q9H3S4 243 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 LRRC4Q9HBW1 653 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 DRG1Q9Y295 367 aaKnown RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 MYH14Q7Z406 1995 aaKnown RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 GLI3P10071 1580 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 GOLGA8CPA6NN73 597 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 LIASO43766 372 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 ADCY3O60266 1144 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 GRAP2O75791 330 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 ABHD2P08910 425 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SSTR1P30872 391 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 PGM1P36871 562 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 IREB2P48200 963 aaKnown RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 OAZ1P54368 228 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SLC12A2P55011 1212 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 TAS2R40P59535 323 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 CCNA1P78396 465 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 PHEXP78562 749 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 ANGEL2Q5VTE6 544 aaKnown RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 DPY19L2Q6NUT2 758 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 CRELD2Q6UXH1 353 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 GALNT7Q86SF2 657 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SMARCAD1Q9H4L7 1026 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SYNDIG1Q9H7V2 258 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.75□□□□□ -0.69
LIG1-220ENST00000601091 UCKL1Q9NWZ5 548 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 CCDC195A0A1B0GUA6 201 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 TXNP10599 105 aaKnown RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 SAT1P21673 171 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 GPD1P21695 349 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 ADSSP30520 456 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 RGS7P49802 495 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 STILQ15468 1287 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 KYAT1Q16773 422 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 EMC1Q8N766 993 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 UBA3Q8TBC4 463 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 PPP2R3CQ969Q6 453 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 KIF12Q96FN5 646 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 NSL1Q96IY1 281 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 GCOM2Q9BZD3 368 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 DLGAP2Q9P1A6 1054 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 HEY2Q9UBP5 337 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 OXSR1O95747 527 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 NCF2P19878 526 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 ECHS1P30084 290 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 HAAOP46952 286 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 RPL7AP62424 266 aaKnown RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 CATSPER4Q7RTX7 472 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 SLITRK1Q96PX8 696 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 FAM111AQ96PZ2 611 aa10.75□□□□□ -0.69
LIG1-220ENST00000601091 PRMT7Q9NVM4 692 aaPredicted RBP10.75□□□□□ -0.69
LIG1-220ENST00000601091 TIPRLO75663 272 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 GH1P01241 217 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 TAF1P21675 1872 aa10.74□□□□□ -0.69
LIG1-220ENST00000601091 DNAJB1P25685 340 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms