RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CLEC16AQ2KHT3 1053 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 LY6G5CQ5SRR4 150 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 ASTLQ6HA08 431 aaPredicted RBP9.64□□□□□ -0.87
VPS35-206ENST00000565228 WDR59Q6PJI9 974 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 MMS22LQ6ZRQ5 1243 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 Q6ZS52 159 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 HTR3DQ70Z44 454 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 FMNL3Q8IVF7 1028 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 DEFB106AQ8N104 65 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 SIX6OS1Q8N1H7 587 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 FBXL6Q8N531 539 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 ANKRD20A12PQ8NF67 263 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 PRSS33Q8NF86 280 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 JOSD2Q8TAC2 188 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 CPLX3Q8WVH0 158 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 IRGQQ8WZA9 623 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 IRF7Q92985 503 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 E2F7Q96AV8 911 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 SLC39A13Q96H72 371 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 AGPAT1Q99943 283 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 MAGEB5Q9BZ81 275 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 HAUS4Q9H6D7 363 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 TMPRSS4Q9NRS4 437 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 AIPL1Q9NZN9 384 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 MARCH2Q9P0N8 246 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 ZMYM5Q9UJ78 669 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 DNMT3LQ9UJW3 386 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 TMEM59LQ9UK28 342 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 AGO1Q9UL18 857 aaKnown RBP9.64□□□□□ -0.87
VPS35-206ENST00000565228 NENFQ9UMX5 172 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 KANSL1LA0AUZ9 987 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 E2F8A0AVK6 867 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 EGFP01133 1207 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 RALAP11233 206 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 MMP8P22894 467 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 CASP14P31944 242 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 KRT9P35527 623 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 FLT3P36888 993 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 PRKCIP41743 596 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 PDE6CP51160 858 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 GALK1P51570 392 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 IRAK1P51617 712 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 TBX2Q13207 712 aaPredicted RBP9.63□□□□□ -0.87
VPS35-206ENST00000565228 ITPRIPL2Q3MIP1 535 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 FIGNQ5HY92 759 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 SH3PXD2AQ5TCZ1 1133 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 BTBD8Q5XKL5 378 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 SMYD5Q6GMV2 418 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 OR6B2Q6IFH4 312 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 BNIPLQ7Z465 357 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 VSTM4Q8IW00 320 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 ETFBKMTQ8IXQ9 262 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 FAM217AQ8IXS0 508 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 YAF2Q8IY57 180 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 EMC1Q8N766 993 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 PJA1Q8NG27 643 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 SPAG5Q96R06 1193 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 C11orf70Q9BRQ4 267 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 ZDHHC4Q9NPG8 344 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 ABCC13Q9NSE7 274 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 NDRG2Q9UN36 371 aaKnown RBP9.63□□□□□ -0.87
VPS35-206ENST00000565228 SNX10Q9Y5X0 201 aa9.63□□□□□ -0.87
VPS35-206ENST00000565228 A0A1W2PQJ5 194 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 FAM170BA6NMN3 283 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 GOLGA6L19H0YKK7 550 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 FBXO21O94952 628 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 TPM2P07951 284 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 CISD3P0C7P0 127 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 NCAM1P13591 858 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 TRIM21P19474 475 aaKnown RBP9.62□□□□□ -0.87
VPS35-206ENST00000565228 CORO1AP31146 461 aaKnown RBP9.62□□□□□ -0.87
VPS35-206ENST00000565228 ACADSBP45954 432 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 IFNAR2P48551 515 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 PSEN1P49768 467 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 BPIFB4P59827 614 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 PFKPQ01813 784 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 SLC6A3Q01959 620 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 OGDHQ02218 1023 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 CENPCQ03188 943 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 PRKCQQ04759 706 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 TCF15Q12870 199 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 CCINQ13939 588 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 FAM133BQ5BKY9 247 aaKnown RBP9.62□□□□□ -0.87
VPS35-206ENST00000565228 TMEM196Q5HYL7 178 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 FYB2Q5VWT5 728 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 TOGARAM2Q6ZUX3 1019 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 MON1BQ7L1V2 547 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 DENND1CQ8IV53 801 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 NAT16Q8N8M0 369 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 TMEM35BQ8NCS4 154 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 ZNF397Q8NF99 534 aaPredicted RBP9.62□□□□□ -0.87
VPS35-206ENST00000565228 WFDC5Q8TCV5 224 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 FAM3CQ92520 227 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 NT5C3BQ969T7 300 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 CLDN23Q96B33 292 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 FAM149B1Q96BN6 582 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 TRIM7Q9C029 511 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 PLK2Q9NYY3 685 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 ARHGAP20Q9P2F6 1191 aa9.62□□□□□ -0.87
VPS35-206ENST00000565228 CAPN11Q9UMQ6 739 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms