RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 ATG16L2Q8NAA4 619 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 FAM98AQ8NCA5 519 aaKnown RBP5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 FAM71BQ8TC56 605 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 ADAMTS18Q8TE60 1221 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 HASPINQ8TF76 798 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 OVCA2Q8WZ82 227 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 ADGRE3Q9BY15 652 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 PRDM13Q9H4Q3 707 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 FBXO28Q9NVF7 368 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 SERGEFQ9UGK8 458 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 VPS4AQ9UN37 437 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 PCDHB2Q9Y5E7 798 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 COL11A2P13942 1736 aaPredicted RBP5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 hCG_1642624A0A1W2PR95 340 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 MANSC4A6NHS7 340 aaPredicted RBP5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 RNF8O76064 485 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 NTSR2O95665 410 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 CHRM5P08912 532 aaPredicted RBP5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 NANOS3P60323 173 aaKnown RBP5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 CFHR3Q02985 330 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 FHL3Q13643 280 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 KCNJ12Q14500 433 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 MFSD13AQ14CX5 517 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 CCDC144NLQ6NUI1 221 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 ZNF788Q6ZQV5 615 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 PRIMA1Q86XR5 153 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 CLASRPQ8N2M8 674 aaKnown RBP5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 STYXQ8WUJ0 223 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 ASB2Q96Q27 587 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 PSMD1Q99460 953 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 ARPC5LQ9BPX5 153 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 KRTAP4-11Q9BYQ6 195 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 TMEM8AQ9HCN3 771 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 MAFFQ9ULX9 164 aa5.63□□□□□ -1.51
HMGB1P38-201ENST00000490557 TMEM232C9JQI7 657 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 FCHO1O14526 889 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 PCDH17O14917 1159 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 NPC1O15118 1278 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 CBFA2T3O75081 653 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 CSTBP04080 98 aaKnown RBP5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 ANXA6P08133 673 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 ITGA2BP08514 1039 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 APEHP13798 732 aaKnown RBP5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 CD38P28907 300 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 GALNSP34059 522 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 IGHMBP2P38935 993 aaKnown RBP5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 TRAPPC10P48553 1259 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 JAK3P52333 1124 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 TUBA4AP68366 448 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 GPC5P78333 572 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 SLC10A2Q12908 348 aaPredicted RBP5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 DNASE1L3Q13609 305 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 PTK2BQ14289 1009 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 TRIM71Q2Q1W2 868 aaKnown RBP5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 ATPAF1Q5TC12 328 aaPredicted RBP5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 EDC3Q96F86 508 aaKnown RBP5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 RMDN3Q96TC7 470 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 SAP30LQ9HAJ7 183 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 VPS45Q9NRW7 570 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 DACT1Q9NYF0 836 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 NFU1Q9UMS0 254 aa5.62□□□□□ -1.51
HMGB1P38-201ENST00000490557 LINC01548A6NM66 108 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 TTC34A8MYJ7 566 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 CLIC1O00299 241 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 FYB1O15117 783 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 DNPH1O43598 174 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 PRAMEF2O60811 474 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 TNFRSF6BO95407 300 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 PRKCGP05129 697 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 PDIA3P30101 505 aaKnown RBP5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 POLE2P56282 527 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 LARS2Q15031 903 aaKnown RBP5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 PROSER3Q2NL68 480 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 GRAMD1BQ3KR37 738 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 ZNF569Q5MCW4 686 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 FAM90A2PQ658T7 463 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 CCDC174Q6PII3 467 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 KLHL17Q6TDP4 642 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 CHSY1Q86X52 802 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 CCDC117Q8IWD4 279 aaPredicted RBP5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 HIC2Q96JB3 615 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 FAR2Q96K12 515 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 PAGR1Q9BTK6 254 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 ASIC5Q9NY37 505 aa5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 UBE2J1Q9Y385 318 aaPredicted RBP5.61□□□□□ -1.51
HMGB1P38-201ENST00000490557 AOX1Q06278 1338 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 SYT5O00445 386 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 TRIM38O00635 465 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 CTIFO43310 598 aaKnown RBP5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 TAF5LO75529 589 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 ITGA5P08648 1049 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 ALADP13716 330 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 MATN1P21941 496 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 CHKAP35790 457 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 WDR5P61964 334 aaKnown RBP5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 RAE1P78406 368 aaKnown RBP5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 NHLH1Q02575 133 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 GRM4Q14833 912 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 KRT72Q14CN4 511 aa5.6□□□□□ -1.51
HMGB1P38-201ENST00000490557 CNGA3Q16281 694 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms