RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 EIF3CQ99613 913 aaKnown RBP8.32□□□□□ -1.08
NUP54-215ENST00000514313 ZCCHC4Q9H5U6 513 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 LIN7CQ9NUP9 197 aaKnown RBP8.32□□□□□ -1.08
NUP54-215ENST00000514313 ZBTB1Q9Y2K1 713 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 ITIH6Q6UXX5 1313 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 CCDC196A0A1B0GTZ2 297 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 A1L4Q6 167 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 UNC119BA6NIH7 251 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 BAIAP3O94812 1187 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 CD19P15391 556 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 THBS4P35443 961 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 BFSP2Q13515 415 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 GRHL2Q6ISB3 625 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 DPY19L3Q6ZPD9 716 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 LCNL1Q6ZST4 164 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 KRT27Q7Z3Y8 459 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 TCP11L2Q8N4U5 519 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 ST8SIA4Q92187 359 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 R3HDM4Q96D70 268 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 REXO5Q96IC2 774 aaKnown RBP8.31□□□□□ -1.08
NUP54-215ENST00000514313 TEPSINQ96N21 525 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 TRIM36Q9NQ86 728 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 BLOC1S4Q9NUP1 217 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 NKX1-2Q9UD57 310 aaPredicted RBP8.31□□□□□ -1.08
NUP54-215ENST00000514313 FBXO2Q9UK22 296 aaPredicted RBP8.31□□□□□ -1.08
NUP54-215ENST00000514313 ARHGAP26Q9UNA1 814 aa8.31□□□□□ -1.08
NUP54-215ENST00000514313 M0QZQ0 153 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 SLC16A3O15427 465 aaKnown RBP8.3□□□□□ -1.08
NUP54-215ENST00000514313 SPDEFO95238 335 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 NR4A1P22736 598 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 LIPAP38571 399 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 RNASELQ05823 741 aaKnown RBP8.3□□□□□ -1.08
NUP54-215ENST00000514313 ST3GAL2Q16842 350 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 CTXN3Q4LDR2 81 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 ZNF484Q5JVG2 852 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 GPATCH4Q5T3I0 446 aaKnown RBP8.3□□□□□ -1.08
NUP54-215ENST00000514313 SLC9C2Q5TAH2 1124 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 ARMC6Q6NXE6 501 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 RINLQ6ZS11 566 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 FUBP1Q96AE4 644 aaKnown RBP8.3□□□□□ -1.08
NUP54-215ENST00000514313 KTI12Q96EK9 354 aaPredicted RBP8.3□□□□□ -1.08
NUP54-215ENST00000514313 DKK2Q9UBU2 259 aa8.3□□□□□ -1.08
NUP54-215ENST00000514313 VWA3AA6NCI4 1184 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 DBX1A6NMT0 343 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 KIAA0355O15063 1070 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 RNASEH2AO75792 299 aaKnown RBP8.29□□□□□ -1.08
NUP54-215ENST00000514313 HEXIM1O94992 359 aaKnown RBP8.29□□□□□ -1.08
NUP54-215ENST00000514313 ITGB3P05106 788 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 FESP07332 822 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 ALADP13716 330 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 ITIH3Q06033 890 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 KCNJ12Q14500 433 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 SF3B3Q15393 1217 aaKnown RBP8.29□□□□□ -1.08
NUP54-215ENST00000514313 TREML2Q5T2D2 321 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 MZT2BQ6NZ67 158 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 ZNF585AQ6P3V2 769 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 DSTYKQ6XUX3 929 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 TSPYL6Q8N831 410 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 ZUFSPQ96AP4 578 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 ZBTB10Q96DT7 871 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 PAIP1Q9H074 479 aaKnown RBP8.29□□□□□ -1.08
NUP54-215ENST00000514313 RMI1Q9H9A7 625 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 PLEKHA2Q9HB19 425 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 KCNK9Q9NPC2 374 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 FBXO28Q9NVF7 368 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 RCE1Q9Y256 329 aa8.29□□□□□ -1.08
NUP54-215ENST00000514313 A8MVJ9 347 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 MCM5P33992 734 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 BMPR1AP36894 532 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 SELENOPP49908 381 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.28□□□□□ -1.08
NUP54-215ENST00000514313 TP53BP2Q13625 1128 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 AAK1Q2M2I8 961 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 NBPF8Q3BBV2 869 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 ZNF569Q5MCW4 686 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 ANKRD40Q6AI12 368 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 RASGRP2Q7LDG7 609 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 P3H2Q8IVL5 708 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 USP38Q8NB14 1042 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 OVCA2Q8WZ82 227 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 NPIPB3Q92617 1050 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 FKBP10Q96AY3 582 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 RSPRY1Q96DX4 576 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 DPCDQ9BVM2 203 aaPredicted RBP8.28□□□□□ -1.08
NUP54-215ENST00000514313 NRDE2Q9H7Z3 1164 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 PREBQ9HCU5 417 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 IRAK4Q9NWZ3 460 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 ST6GALNAC2Q9UJ37 374 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 RAB21Q9UL25 225 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 TBX20Q9UMR3 447 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 UBE2J1Q9Y385 318 aaPredicted RBP8.28□□□□□ -1.08
NUP54-215ENST00000514313 TCAF1Q9Y4C2 921 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 AFG3L2Q9Y4W6 797 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 ADGRA2Q96PE1 1338 aa8.28□□□□□ -1.08
NUP54-215ENST00000514313 PSMD9O00233 223 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 SPRY2O43597 315 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 PEPDP12955 493 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 DGKQP52824 942 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 SEMA3BQ13214 749 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 NFIXQ14938 502 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms