RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 CERKLQ49MI3 558 aaPredicted RBP5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 TMEM63BQ5T3F8 832 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 TMTC4Q5T4D3 741 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 TLDC1Q6P9B6 456 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 DNAJC10Q8IXB1 793 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 PNPLA1Q8N8W4 532 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 FAM71DQ8N9W8 422 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 C18orf8Q96DM3 657 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 CCDC17Q96LX7 622 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 SNX18Q96RF0 628 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 ADAM21Q9UKJ8 722 aa5.68□□□□□ -1.5
HMGB1P38-201ENST00000490557 PNMA6EA0A0J9YXQ4 647 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 UBE2Q2LH0YL09 131 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 ZNF213O14771 459 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 SUV39H1O43463 412 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 CA12O43570 354 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 USP1O94782 785 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 HTR7P34969 479 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 IL6STP40189 918 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 PBX1P40424 430 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 ALDH18A1P54886 795 aaKnown RBP5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 CCDC15Q0P6D6 951 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 ACOX1Q15067 660 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 PUM3Q15397 648 aaKnown RBP5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 TMEM119Q4V9L6 283 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 RNASE12Q5GAN4 147 aaKnown RBP5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 TMEM196Q5HYL7 178 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 C10orf62Q5T681 223 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 FCRLBQ6BAA4 426 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 TMEM65Q6PI78 240 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 PMM1Q92871 262 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 CTHRC1Q96CG8 243 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 SLC39A13Q96H72 371 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 FYTTD1Q96QD9 318 aaKnown RBP5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 NUDT22Q9BRQ3 303 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 THAP7Q9BT49 309 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 CHMP4AQ9BY43 222 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 R3HDMLQ9H3Y0 253 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 EPS8L2Q9H6S3 715 aa5.67□□□□□ -1.5
HMGB1P38-201ENST00000490557 LRRC3CA6NJW4 275 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 H7C1Q1 480 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 J3KTA2 159 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 MCM5P33992 734 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 RENBPP51606 427 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 DEUP1Q05D60 604 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 SEMA3BQ13214 749 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 TRIM14Q14142 442 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 CSHL1Q14406 222 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 C4orf46Q504U0 113 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 KRT27Q7Z3Y8 459 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 C16orf71Q8IYS4 520 aaPredicted RBP5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 WDR24Q96S15 920 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 OBP2BQ9NPH6 170 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 LRFN1Q9P244 771 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 ASAP1Q9ULH1 1129 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 DTNAQ9Y4J8 743 aa5.66□□□□□ -1.5
HMGB1P38-201ENST00000490557 OR2W5A6NFC9 320 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 MT-CO3P00414 261 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 SLC3A2P08195 630 aaKnown RBP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 TMIGD3P0DMS9 266 aaPredicted RBP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 NPPBP16860 134 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 MMP8P22894 467 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 AKT1P31749 480 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 BLMHQ13867 455 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 SPARCL1Q14515 664 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 PDCD2Q16342 344 aaPredicted RBP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 PFKFB4Q16877 469 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 ZACNQ401N2 412 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 PRAMEF17Q5VTA0 474 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 PTF1AQ7RTS3 328 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 BCDIN3DQ7Z5W3 292 aaKnown RBP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 NRSN1Q8IZ57 195 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 C12orf76Q8N812 135 aaPredicted RBP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 PNLDC1Q8NA58 520 aaKnown RBP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 MAFAQ8NHW3 353 aaPredicted RBP5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 WDR60Q8WVS4 1066 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 REPS1Q96D71 796 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 PTGFRNQ9P2B2 879 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 IGSF9Q9P2J2 1179 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 COX11Q9Y6N1 276 aa5.65□□□□□ -1.5
HMGB1P38-201ENST00000490557 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 AQP12BA6NM10 295 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 LGALS16A8MUM7 142 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 BTBD19C9JJ37 291 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 POC1B-GALNT4F8VUJ3 575 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 ASNA1O43681 348 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 C1QL1O75973 258 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 MTAPQ13126 283 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 CBFBQ13951 182 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 KCNB1Q14721 858 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 FAM187BQ17R55 369 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 AASDHQ4L235 1098 aaPredicted RBP5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 CCDC38Q502W7 563 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 CC2D1BQ5T0F9 858 aaKnown RBP5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 GRHL2Q6ISB3 625 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 RINT1Q6NUQ1 792 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 VSTM1Q6UX27 236 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 DCDC5Q6ZRR9 648 aa5.64□□□□□ -1.51
HMGB1P38-201ENST00000490557 GALNT4Q8N4A0 578 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms