RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SMPD4Q9NXE4 827 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 AIPL1Q9NZN9 384 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 TJP2Q9UDY2 1190 aa21.29■■□□□ 1
PTCD3-220ENST00000627371 LEFTY2O00292 366 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 ZNF263O14978 683 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 CHADO15335 359 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 SNX16P57768 344 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 NOMO3P69849 1222 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 PLCB2Q00722 1185 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 PFKPQ01813 784 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 MTF1Q14872 753 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 ASIC2Q16515 512 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 C10orf120Q5SQS8 335 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 SFMBT2Q5VUG0 894 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 BSPRYQ5W0U4 402 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 BTBD8Q5XKL5 378 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 TRIM72Q6ZMU5 477 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 HFE2Q6ZVN8 426 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 KIAA1958Q8N8K9 716 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 IPO4Q8TEX9 1081 aaKnown RBP21.28■■□□□ 1
PTCD3-220ENST00000627371 DNASE1L2Q92874 299 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 IRF7Q92985 503 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 EPHX3Q9H6B9 360 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 BRD9Q9H8M2 597 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 ABCC13Q9NSE7 274 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 THG1LQ9NWX6 298 aaKnown RBP21.28■■□□□ 1
PTCD3-220ENST00000627371 DNMT3LQ9UJW3 386 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 NUDT5Q9UKK9 219 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 CAPN11Q9UMQ6 739 aa21.28■■□□□ 1
PTCD3-220ENST00000627371 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.28■■□□□ 1
PTCD3-220ENST00000627371 ARNTLO00327 626 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 AP5Z1O43299 807 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 LTFP02788 710 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 CYP1A1P04798 512 aaPredicted RBP21.27■■□□□ 1
PTCD3-220ENST00000627371 GYPCP04921 128 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 E4F1Q66K89 784 aaPredicted RBP21.27■■□□□ 1
PTCD3-220ENST00000627371 SPECC1LQ69YQ0 1117 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 TRIM67Q6ZTA4 783 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 RSRC2Q7L4I2 434 aaKnown RBP21.27■■□□□ 1
PTCD3-220ENST00000627371 VSTM4Q8IW00 320 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 GOLGA1Q92805 767 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 AGPAT1Q99943 283 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 KLF16Q9BXK1 252 aaPredicted RBP21.27■■□□□ 1
PTCD3-220ENST00000627371 NUCKS1Q9H1E3 243 aaKnown RBP21.27■■□□□ 1
PTCD3-220ENST00000627371 TRPV5Q9NQA5 729 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 OLA1Q9NTK5 396 aaKnown RBP21.27■■□□□ 1
PTCD3-220ENST00000627371 WNT16Q9UBV4 365 aa21.27■■□□□ 1
PTCD3-220ENST00000627371 MDM4O15151 490 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 ERBB2P04626 1255 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 PRKCIP41743 596 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 ZBED6P86452 979 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 NAA35Q5VZE5 725 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 CC2D1AQ6P1N0 951 aaPredicted RBP21.26■□□□□ 0.99
PTCD3-220ENST00000627371 MSANTD4Q8NCY6 345 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 TTC16Q8NEE8 873 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 ZNF397Q8NF99 534 aaPredicted RBP21.26■□□□□ 0.99
PTCD3-220ENST00000627371 EDEM1Q92611 657 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 ASIC4Q96FT7 647 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 ZFYVE19Q96K21 471 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 SYNCQ9H7C4 482 aa21.26■□□□□ 0.99
PTCD3-220ENST00000627371 GABRB2P47870 512 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 GOLGA8FQ08AF8 430 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 GOLGA8DPQ0D2H9 430 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 EFEMP1Q12805 493 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 TRIM14Q14142 442 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 FAM183BPQ6ZVS7 135 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 BEND5Q7L4P6 421 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 ERICH1Q86X53 443 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 ZDHHC17Q8IUH5 632 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 RNF139Q8WU17 664 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 OSCP1Q8WVF1 389 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 CPLX3Q8WVH0 158 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 CPA5Q8WXQ8 436 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 SYN2Q92777 582 aaPredicted RBP21.25■□□□□ 0.99
PTCD3-220ENST00000627371 FAM149B1Q96BN6 582 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 PCDHB18PQ96TA0 734 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 FAM83CQ9BQN1 747 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 SYT11Q9BT88 431 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 TRIM62Q9BVG3 475 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 TRIM5Q9C035 493 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 GKN1Q9NS71 199 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 CFAP97Q9P2B7 532 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 RASAL2Q9UJF2 1139 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 FBXL21Q9UKT6 434 aa21.25■□□□□ 0.99
PTCD3-220ENST00000627371 LUC7L2Q9Y383 392 aaKnown RBP21.25■□□□□ 0.99
PTCD3-220ENST00000627371 COL4A3Q01955 1670 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 MYOFQ9NZM1 2061 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 UNGP13051 313 aaPredicted RBP21.24■□□□□ 0.99
PTCD3-220ENST00000627371 MSANTD2Q6P1R3 559 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 OLFML1Q6UWY5 402 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 MIB1Q86YT6 1006 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 C18orf8Q96DM3 657 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 PIWIL1Q96J94 861 aaKnown RBP21.24■□□□□ 0.99
PTCD3-220ENST00000627371 ASNSD1Q9NWL6 643 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 MARCH2Q9P0N8 246 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 STRIP2Q9ULQ0 834 aa21.24■□□□□ 0.99
PTCD3-220ENST00000627371 E2F8A0AVK6 867 aa21.23■□□□□ 0.99
PTCD3-220ENST00000627371 TMEM221A6NGB7 291 aa21.23■□□□□ 0.99
PTCD3-220ENST00000627371 M0R296 226 aa21.23■□□□□ 0.99
PTCD3-220ENST00000627371 FYNP06241 537 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms