RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ZNF280BQ86YH2 543 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 CENPIQ92674 756 aaPredicted RBP17.56■□□□□ 0.4
LDLR-206ENST00000557958 FAM149B1Q96BN6 582 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 HAUS1Q96CS2 278 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 ATP6V1G3Q96LB4 118 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 STAP1Q9ULZ2 295 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 SCN5AQ14524 2016 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.56■□□□□ 0.4
LDLR-206ENST00000557958 DAB1O75553 588 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 ACRP10323 421 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 ARSEP51690 589 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 MRPS5P82675 430 aaKnown RBP17.56■□□□□ 0.4
LDLR-206ENST00000557958 DPYSL3Q14195 570 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 MAPRE1Q15691 268 aaKnown RBP17.56■□□□□ 0.4
LDLR-206ENST00000557958 TIGD5Q53EQ6 642 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 TTMPQ5BVD1 217 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 ERMARDQ5T6L9 678 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 RHBDF2Q6PJF5 856 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 DCLRE1AQ6PJP8 1040 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 FAM35AQ86V20 835 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 CCDC25Q86WR0 208 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 RSAD2Q8WXG1 361 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 SMARCD1Q96GM5 515 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 ACBD6Q9BR61 282 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 ZNF670Q9BS34 389 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 TMBIM4Q9HC24 238 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 CRTAC1Q9NQ79 661 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 KANSL3Q9P2N6 904 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 PRKAG2Q9UGJ0 569 aa17.56■□□□□ 0.4
LDLR-206ENST00000557958 M0QZQ0 153 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 CLDN5O00501 218 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 AP1G2O75843 785 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 CD48P09326 243 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 YWHAZP63104 245 aaKnown RBP17.55■□□□□ 0.4
LDLR-206ENST00000557958 P3H1Q32P28 736 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 CNKSR3Q6P9H4 555 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 CYP4V2Q6ZWL3 525 aaPredicted RBP17.55■□□□□ 0.4
LDLR-206ENST00000557958 PCGF5Q86SE9 256 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 THEM5Q8N1Q8 247 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 CLEC4CQ8WTT0 213 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 P3H4Q92791 437 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 ARL8AQ96BM9 186 aa17.55■□□□□ 0.4
LDLR-206ENST00000557958 C11orf84Q9BUA3 381 aaPredicted RBP17.55■□□□□ 0.4
LDLR-206ENST00000557958 I3L4J1 428 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 DDHD2O94830 711 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 TGM2P21980 687 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 OR1G1P47890 313 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 CDR1P51861 262 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 HDAC4P56524 1084 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 MAP3K7CLP57077 242 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 SLC25A52Q3SY17 297 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 KRT71Q3SY84 523 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 FAM117BQ6P1L5 589 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 PAQR9Q6ZVX9 377 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 PSTKQ8IV42 348 aaKnown RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 TMEM199Q8N511 208 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 PCED1BQ96HM7 432 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 RNF157Q96PX1 679 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 TMEM121Q9BTD3 319 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 SNRNP25Q9BV90 132 aaKnown RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 CENPHQ9H3R5 247 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 CNGB3Q9NQW8 809 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 TBC1D13Q9NVG8 400 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 TIMM13Q9Y5L4 95 aaPredicted RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 TBKBP1A7MCY6 615 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 DNALI1O14645 258 aaPredicted RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 APOL1O14791 398 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 IFNB1P01574 187 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 ZFXP17010 805 aaPredicted RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 CAPN2P17655 700 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 TYMPP19971 482 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 NOS2P35228 1153 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 LMAN1P49257 510 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 EIF3EP60228 445 aaKnown RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 GPS1Q13098 491 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 MORF4L2Q15014 288 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 AGBL2Q5U5Z8 902 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 ARFGAP2Q8N6H7 521 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 ELAC1Q9H777 363 aaKnown RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 PRDM16Q9HAZ2 1276 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 TPX2Q9ULW0 747 aaKnown RBP17.54■□□□□ 0.4
LDLR-206ENST00000557958 TET1Q8NFU7 2136 aa17.54■□□□□ 0.4
LDLR-206ENST00000557958 F8W810 466 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 SMAPO00193 183 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 KIAA0355O15063 1070 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 RIPK2O43353 540 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 STIP1P31948 543 aaKnown RBP17.53■□□□□ 0.4
LDLR-206ENST00000557958 RFC2P35250 354 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 BRCC3P46736 316 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 SULT1E1P49888 294 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 TKTL1P51854 596 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 TSPY1Q01534 308 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 ROR1Q01973 937 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 DPYSL2Q16555 572 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 INTS6LQ5JSJ4 861 aaKnown RBP17.53■□□□□ 0.4
LDLR-206ENST00000557958 KIAA0319Q5VV43 1072 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 OVOS1Q6IE37 1185 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 MFSD5Q6N075 450 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 HIBCHQ6NVY1 386 aaPredicted RBP17.53■□□□□ 0.4
LDLR-206ENST00000557958 TMCO2Q7Z6W1 182 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms