RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PDPRQ8NCN5 879 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 TMIEQ8NEW7 156 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 PPHLN1Q8NEY8 458 aaKnown RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 SNX19Q92543 992 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 TRIM43Q96BQ3 446 aaPredicted RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 ZSCAN31Q96LW9 406 aaPredicted RBP4.79□□□□□ -1.64
VPS29-202ENST00000447578 RMDN3Q96TC7 470 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 STK33Q9BYT3 514 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 IMPG2Q9BZV3 1241 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 DACT1Q9NYF0 836 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 ITGB1BP2Q9UKP3 347 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 ZDHHC8Q9ULC8 765 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 MED16Q9Y2X0 877 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 ABCC10Q5T3U5 1492 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 TEX14Q8IWB6 1497 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 C9orf84Q5VXU9 1444 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 ANKRD50Q9ULJ7 1429 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 KIAA1107Q9UPP5 1409 aa4.79□□□□□ -1.64
VPS29-202ENST00000447578 CCDC195A0A1B0GUA6 201 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 WDR27A2RRH5 827 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 LGALS16A8MUM7 142 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 AREL1O15033 823 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 RHOP08100 348 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 ANXA11P50995 505 aaKnown RBP4.78□□□□□ -1.64
VPS29-202ENST00000447578 ARL4CP56559 192 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 CTBP1Q13363 440 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 RAB32Q13637 225 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 SIM2Q14190 667 aaPredicted RBP4.78□□□□□ -1.64
VPS29-202ENST00000447578 SPARCL1Q14515 664 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 POSTNQ15063 836 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 TAF12Q16514 161 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 RRAGBQ5VZM2 374 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 MZT2AQ6P582 158 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 FBXO38Q6PIJ6 1188 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 CYP26C1Q6V0L0 522 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 UNC13DQ70J99 1090 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 B3GALNT2Q8NCR0 500 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 CCDC150Q8NCX0 1101 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 SLC17A8Q8NDX2 589 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 IL17RDQ8NFM7 739 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 IL17REQ8NFR9 667 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 SKA1Q96BD8 255 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 C18orf8Q96DM3 657 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 SORBS1Q9BX66 1292 aaKnown RBP4.78□□□□□ -1.64
VPS29-202ENST00000447578 TMEM120AQ9BXJ8 343 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 EIF2AQ9BY44 585 aaKnown RBP4.78□□□□□ -1.64
VPS29-202ENST00000447578 DPH1Q9BZG8 443 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 ZNF518BQ9C0D4 1074 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 MAGEH1Q9H213 219 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 BRD9Q9H8M2 597 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 SMURF2Q9HAU4 748 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 TM7SF3Q9NS93 570 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 TBC1D23Q9NUY8 699 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 CNTLNQ9NXG0 1405 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 NUP155O75694 1391 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 CCDC7Q96M83 1385 aa4.78□□□□□ -1.64
VPS29-202ENST00000447578 ADGRA2Q96PE1 1338 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 SHANK2Q9UPX8 1470 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 NPC1O15118 1278 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 TP73O15350 636 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 TNFAIP3P21580 790 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 SOX10P56693 466 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 GEMIN4P57678 1058 aaKnown RBP4.77□□□□□ -1.65
VPS29-202ENST00000447578 TAF5Q15542 800 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 EZH2Q15910 746 aaKnown RBP4.77□□□□□ -1.65
VPS29-202ENST00000447578 CCDC93Q567U6 631 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 MTX3Q5HYI7 312 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 LMBRD2Q68DH5 695 aaPredicted RBP4.77□□□□□ -1.65
VPS29-202ENST00000447578 ZNF782Q6ZMW2 699 aaPredicted RBP4.77□□□□□ -1.65
VPS29-202ENST00000447578 CATSPERGQ6ZRH7 1159 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 TMPRSS9Q7Z410 1059 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 MAATS1Q7Z4T9 603 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 MICU3Q86XE3 530 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 MPP5Q8N3R9 675 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 VGLL2Q8N8G2 317 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 FANCBQ8NB91 859 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 NAXEQ8NCW5 288 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 IPCEF1Q8WWN9 437 aaPredicted RBP4.77□□□□□ -1.65
VPS29-202ENST00000447578 MAML1Q92585 1016 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 LRRC46Q96FV0 321 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 UBXN10Q96LJ8 280 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 FAM167BQ9BTA0 163 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 STK31Q9BXU1 1019 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 PACSIN1Q9BY11 444 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 A1CFQ9NQ94 594 aaKnown RBP4.77□□□□□ -1.65
VPS29-202ENST00000447578 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.77□□□□□ -1.65
VPS29-202ENST00000447578 JKAMPQ9P055 326 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 NEU2Q9Y3R4 380 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 KIF15Q9NS87 1388 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 ADGBQ8N7X0 1667 aa4.77□□□□□ -1.65
VPS29-202ENST00000447578 KIF7Q2M1P5 1343 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 PYCARD-AS1I3L0S3 204 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 MYO1CO00159 1063 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 EIF3FO00303 357 aaPredicted RBP4.76□□□□□ -1.65
VPS29-202ENST00000447578 PODXLO00592 558 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 IRAK2O43187 625 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 SLC43A1O75387 559 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 GNAI2P04899 355 aa4.76□□□□□ -1.65
VPS29-202ENST00000447578 HSP90AA1P07900 732 aaKnown RBP4.76□□□□□ -1.65
VPS29-202ENST00000447578 GJB1P08034 283 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms