RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 MAMSTRQ6ZN01 415 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 FAM183BPQ6ZVS7 135 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 GAREM2Q75VX8 874 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 MON1AQ86VX9 555 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 ZDHHC17Q8IUH5 632 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 TMEM139Q8IV31 216 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 SCML4Q8N228 414 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 CCDC112Q8NEF3 446 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 PDZD8Q8NEN9 1154 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 CLEC4CQ8WTT0 213 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 OVCA2Q8WZ82 227 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 NDRG1Q92597 394 aaKnown RBP12.18□□□□□ -0.46
YBX3-213ENST00000542641 VCPIP1Q96JH7 1222 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 C11orf70Q9BRQ4 267 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 ISCUQ9H1K1 167 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 ATXN3LQ9H3M9 355 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 IL21Q9HBE4 155 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 TLR8Q9NR97 1041 aaKnown RBP12.18□□□□□ -0.46
YBX3-213ENST00000542641 SPTLC3Q9NUV7 552 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 TRPM5Q9NZQ8 1165 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 GMIPQ9P107 970 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 CDH22Q9UJ99 828 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 STRIP2Q9ULQ0 834 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 COG5Q9UP83 839 aa12.18□□□□□ -0.46
YBX3-213ENST00000542641 MRPS23Q9Y3D9 190 aaKnown RBP12.18□□□□□ -0.46
YBX3-213ENST00000542641 EPN1Q9Y6I3 576 aaPredicted RBP12.18□□□□□ -0.46
YBX3-213ENST00000542641 A0A1W2PQH9 124 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 A0A1W2PRU2 124 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 YJEFN3A6XGL0 299 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 E7ENQ6 273 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 NRDCO43847 1150 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 F11P03951 625 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 FSHRP23945 695 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 CCR2P41597 374 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 YWHAGP61981 247 aaKnown RBP eCLIP12.17□□□□□ -0.46
YBX3-213ENST00000542641 SLC6A3Q01959 620 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 PTP4A2Q12974 167 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 ZNF268Q14587 947 aaPredicted RBP12.17□□□□□ -0.46
YBX3-213ENST00000542641 MTF1Q14872 753 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 EFHC1Q5JVL4 640 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 TOGARAM2Q6ZUX3 1019 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 MON1BQ7L1V2 547 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 PHLDB2Q86SQ0 1253 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 TMEM150AQ86TG1 271 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 XYLT1Q86Y38 959 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 DNAAF5Q86Y56 855 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 MCOLN2Q8IZK6 566 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 ARHGAP18Q8N392 663 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 IRGQQ8WZA9 623 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 MRPS31Q92665 395 aaKnown RBP12.17□□□□□ -0.46
YBX3-213ENST00000542641 GOLGA1Q92805 767 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 TCEAL4Q96EI5 215 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 NECTIN4Q96NY8 510 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 WDR6Q9NNW5 1121 aaKnown RBP12.17□□□□□ -0.46
YBX3-213ENST00000542641 AVENQ9NQS1 362 aaPredicted RBP12.17□□□□□ -0.46
YBX3-213ENST00000542641 WDR35Q9P2L0 1181 aa12.17□□□□□ -0.46
YBX3-213ENST00000542641 USP15Q9Y4E8 981 aaPredicted RBP12.17□□□□□ -0.46
YBX3-213ENST00000542641 XIRP2A4UGR9 3374 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 NCANO14594 1321 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 CLUHO75153 1309 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 ZNF840PA6NDX5 716 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 EIF3CLB5ME19 914 aaKnown RBP12.16□□□□□ -0.46
YBX3-213ENST00000542641 GOLGA8SH3BPF8 625 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 TADA3O75528 432 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 NDUFA10O95299 355 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 IPO7O95373 1038 aaKnown RBP12.16□□□□□ -0.46
YBX3-213ENST00000542641 ZDHHC11BP0C7U3 371 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 GJA1P17302 382 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 ABCB4P21439 1286 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 RRM1P23921 792 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 PGFP49763 221 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 YWHAZP63104 245 aaKnown RBP12.16□□□□□ -0.46
YBX3-213ENST00000542641 CYP4F8P98187 520 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 SMAD4Q13485 552 aaKnown RBP12.16□□□□□ -0.46
YBX3-213ENST00000542641 CBX2Q14781 532 aaPredicted RBP12.16□□□□□ -0.46
YBX3-213ENST00000542641 SPA17Q15506 151 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 TEAD2Q15562 447 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 SLC5A9Q2M3M2 681 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 ARHGAP15Q53QZ3 475 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 PRSS36Q5K4E3 855 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 C10orf76Q5T2E6 689 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 FAM102AQ5T9C2 384 aaPredicted RBP12.16□□□□□ -0.46
YBX3-213ENST00000542641 SNX30Q5VWJ9 437 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 BSPRYQ5W0U4 402 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 BTBD8Q5XKL5 378 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 OLFML1Q6UWY5 402 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 RAD9BQ6WBX8 426 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 BHLHA9Q7RTU4 235 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 SCD5Q86SK9 330 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 SHKBP1Q8TBC3 707 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 FAM149B1Q96BN6 582 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 TRIM11Q96F44 468 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 PPP1R9BQ96SB3 815 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 EIF3CQ99613 913 aaKnown RBP12.16□□□□□ -0.46
YBX3-213ENST00000542641 NMUR1Q9HB89 426 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 TRPC7Q9HCX4 862 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 SCUBE2Q9NQ36 999 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 ABCC13Q9NSE7 274 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 NENFQ9UMX5 172 aa12.16□□□□□ -0.46
YBX3-213ENST00000542641 MYH10P35580 1976 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms