RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ZNF263O14978 683 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 TCP1P17987 556 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 MAP3K7CLP57077 242 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 GCNT1Q02742 428 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 PDE1CQ14123 709 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 RCN2Q14257 317 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 CTXN3Q4LDR2 81 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 C9orf50Q5SZB4 431 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 PPP1R26Q5T8A7 1209 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 HGSNATQ68CP4 663 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 FAM109BQ6ICB4 259 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 KDM7AQ6ZMT4 941 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 OSTM1Q86WC4 334 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 SEPT5Q99719 369 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 GPR62Q9BZJ7 368 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 GPR88Q9GZN0 384 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 OSGEPQ9NPF4 335 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 ADAM22Q9P0K1 906 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 TSPAN16Q9UKR8 245 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 MYBPHLA2RUH7 354 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 HMGB1P1B2RPK0 211 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 BAG2O95816 211 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 BDNFP23560 247 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 FLT3P36888 993 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 CUL3Q13618 768 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 TAF12Q16514 161 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 SLC39A12Q504Y0 691 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 FIGNQ5HY92 759 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 CFAP157Q5JU67 520 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 TMC7Q7Z402 723 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 TRIM51Q9BSJ1 452 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 NAGPAQ9UK23 515 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 NR2E3Q9Y5X4 410 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF623O75123 536 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 ATP6V1G1O75348 118 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 EOMESO95936 686 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 ODC1P11926 461 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 KCNE1P15382 129 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 CTNNB1P35222 781 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 PPIGQ13427 754 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 SLC18A3Q16572 532 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 MGAT5BQ3V5L5 792 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 RBM23Q86U06 439 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 FAM71AQ8IYT1 594 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 NAF1Q96HR8 494 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 SYT15Q9BQS2 421 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 UBE2OQ9C0C9 1292 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 CHCHD3Q9NX63 227 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 NUDT5Q9UKK9 219 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 BARX2Q9UMQ3 279 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 CHD7Q9P2D1 2997 aa9.07□□□□□ -0.96
LIMCH1-209ENST00000509277 TARSL2A2RTX5 802 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 LCHNA4D1U4 455 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 RTN2O75298 545 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 GRIK1P39086 918 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 PNPLA4P41247 253 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 BPIFB4P59827 614 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TAS1R1Q7RTX1 841 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 EMC1Q8N766 993 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ATAD1Q8NBU5 361 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 APBB2Q92870 758 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 FAM161BQ96MY7 647 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 NUDCD1Q96RS6 583 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 COLEC11Q9BWP8 271 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 IL23AQ9NPF7 189 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 UBN1Q9NPG3 1134 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 CHMP2BQ9UQN3 213 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 SNX24Q9Y343 169 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 BZW2Q9Y6E2 419 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 C5orf42Q9H799 3197 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TCP11X1B4DZS4 312 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TPD52L2O43399 206 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 OPHN1O60890 802 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 HNRNPCP07910 306 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 KRT16P08779 473 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TUBP50607 506 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 JAM2P57087 298 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TSPY1Q01534 308 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 FMO1Q01740 532 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 UPP1Q16831 310 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 WLSQ5T9L3 541 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 SCYL2Q6P3W7 929 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ENOSF1Q7L5Y1 443 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TRPM8Q7Z2W7 1104 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ARHGAP22Q7Z5H3 698 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF598Q86UK7 904 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 THEM5Q8N1Q8 247 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 SLC4A11Q8NBS3 891 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ARHGEF26Q96DR7 871 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 B3GNT5Q9BYG0 378 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 KRT82Q9NSB4 513 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 AIPL1Q9NZN9 384 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 KANSL3Q9P2N6 904 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 TTC3P53804 2025 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 MICAL2O94851 1124 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ACSL3O95573 720 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ACO1P21399 889 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ATICP31939 592 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 CDR2Q01850 454 aa9.06□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF211Q13398 564 aaPredicted RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 191.3 ms