RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 RUNDC1Q96C34 613 aa18.97■□□□□ 0.63
PTPRF-201ENST00000359947 SMARCA4P51532 1647 aa18.96■□□□□ 0.63
PTPRF-201ENST00000359947 XPCQ01831 940 aaPredicted RBP18.96■□□□□ 0.63
PTPRF-201ENST00000359947 FGD5Q6ZNL6 1462 aa18.96■□□□□ 0.63
PTPRF-201ENST00000359947 CHMP4CQ96CF2 233 aa18.96■□□□□ 0.63
PTPRF-201ENST00000359947 IPO9Q96P70 1041 aaKnown RBP18.96■□□□□ 0.63
PTPRF-201ENST00000359947 RNF20Q5VTR2 975 aa18.95■□□□□ 0.62
PTPRF-201ENST00000359947 CCDC47Q96A33 483 aaKnown RBP18.95■□□□□ 0.62
PTPRF-201ENST00000359947 VPS37CA5D8V6 355 aaPredicted RBP18.95■□□□□ 0.62
PTPRF-201ENST00000359947 ATP6V1DQ9Y5K8 247 aa18.95■□□□□ 0.62
PTPRF-201ENST00000359947 RRP1P56182 461 aaKnown RBP18.95■□□□□ 0.62
PTPRF-201ENST00000359947 RALYLQ86SE5 291 aaKnown RBP18.95■□□□□ 0.62
PTPRF-201ENST00000359947 UBTFL1P0CB47 393 aaPredicted RBP18.94■□□□□ 0.62
PTPRF-201ENST00000359947 GNAI1P63096 354 aa18.94■□□□□ 0.62
PTPRF-201ENST00000359947 ATP2B2Q01814 1243 aa18.94■□□□□ 0.62
PTPRF-201ENST00000359947 BICD2Q8TD16 824 aa18.94■□□□□ 0.62
PTPRF-201ENST00000359947 PRKRIP1Q9H875 184 aaPredicted RBP18.94■□□□□ 0.62
PTPRF-201ENST00000359947 REC8O95072 547 aa18.94■□□□□ 0.62
PTPRF-201ENST00000359947 LNPKQ9C0E8 428 aa18.94■□□□□ 0.62
PTPRF-201ENST00000359947 MIA2Q96PC5 1412 aa18.93■□□□□ 0.62
PTPRF-201ENST00000359947 DNAJC2Q99543 621 aaKnown RBP18.93■□□□□ 0.62
PTPRF-201ENST00000359947 PRAM1Q96QH2 718 aa18.93■□□□□ 0.62
PTPRF-201ENST00000359947 TMEM132AQ24JP5 1023 aa18.92■□□□□ 0.62
PTPRF-201ENST00000359947 ZNF592Q92610 1267 aa18.91■□□□□ 0.62
PTPRF-201ENST00000359947 ERC2O15083 957 aa18.91■□□□□ 0.62
PTPRF-201ENST00000359947 R3HCC1Q9Y3T6 440 aaKnown RBP18.91■□□□□ 0.62
PTPRF-201ENST00000359947 RRP12Q5JTH9 1297 aaKnown RBP18.91■□□□□ 0.62
PTPRF-201ENST00000359947 ROCK1Q13464 1354 aa18.91■□□□□ 0.62
PTPRF-201ENST00000359947 CFAP70Q5T0N1 1121 aa18.9■□□□□ 0.62
PTPRF-201ENST00000359947 RBM5P52756 815 aaKnown RBP eCLIP18.9■□□□□ 0.62
PTPRF-201ENST00000359947 CNNM1Q9NRU3 951 aa18.9■□□□□ 0.62
PTPRF-201ENST00000359947 SLC26A8Q96RN1 970 aa18.9■□□□□ 0.62
PTPRF-201ENST00000359947 CABP4P57796 275 aa18.89■□□□□ 0.62
PTPRF-201ENST00000359947 MTHFSP49914 203 aa18.89■□□□□ 0.62
PTPRF-201ENST00000359947 SAFBQ15424 915 aaKnown RBP eCLIP18.89■□□□□ 0.61
PTPRF-201ENST00000359947 PLEKHO1Q53GL0 409 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-201ENST00000359947 TATP17735 454 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-201ENST00000359947 MYOM3Q5VTT5 1437 aa18.89■□□□□ 0.61
PTPRF-201ENST00000359947 MYL6BP14649 208 aa18.88■□□□□ 0.61
PTPRF-201ENST00000359947 DDX11L8A8MPP1 907 aa18.88■□□□□ 0.61
PTPRF-201ENST00000359947 PANK1Q8TE04 598 aa18.88■□□□□ 0.61
PTPRF-201ENST00000359947 ANKRD20A12PQ8NF67 263 aa18.88■□□□□ 0.61
PTPRF-201ENST00000359947 WASHC2AQ641Q2 1341 aa18.87■□□□□ 0.61
PTPRF-201ENST00000359947 NAP1L1P55209 391 aaKnown RBP18.87■□□□□ 0.61
PTPRF-201ENST00000359947 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.87■□□□□ 0.615e-7■■■■■ 120.3
PTPRF-201ENST00000359947 HSP90AB4PQ58FF6 505 aa18.87■□□□□ 0.61
PTPRF-201ENST00000359947 BICDL1Q6ZP65 573 aa18.87■□□□□ 0.61
PTPRF-201ENST00000359947 PDE4AP27815 886 aa18.87■□□□□ 0.61
PTPRF-201ENST00000359947 THEMISQ8N1K5 641 aaPredicted RBP18.87■□□□□ 0.61
PTPRF-201ENST00000359947 FSD1Q9BTV5 496 aa18.87■□□□□ 0.61
PTPRF-201ENST00000359947 SMC3Q9UQE7 1217 aa18.87■□□□□ 0.61
PTPRF-201ENST00000359947 TNNT3P45378 269 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-201ENST00000359947 PATL2C9JE40 543 aaKnown RBP18.86■□□□□ 0.61
PTPRF-201ENST00000359947 ATP2B1P20020 1258 aa18.86■□□□□ 0.61
PTPRF-201ENST00000359947 TBC1D2BQ9UPU7 963 aa18.86■□□□□ 0.61
PTPRF-201ENST00000359947 CT47A1Q5JQC4 288 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-201ENST00000359947 IPO7O95373 1038 aaKnown RBP18.86■□□□□ 0.61
PTPRF-201ENST00000359947 SMG6Q86US8 1419 aaKnown RBP18.86■□□□□ 0.61
PTPRF-201ENST00000359947 HOOK1Q9UJC3 728 aaKnown RBP18.85■□□□□ 0.61
PTPRF-201ENST00000359947 ZFYVE27Q5T4F4 411 aa18.85■□□□□ 0.61
PTPRF-201ENST00000359947 RAPGEF3O95398 923 aa18.84■□□□□ 0.61
PTPRF-201ENST00000359947 SURF6O75683 361 aaKnown RBP18.84■□□□□ 0.61
PTPRF-201ENST00000359947 CCDC30Q5VVM6 783 aa18.84■□□□□ 0.61
PTPRF-201ENST00000359947 BCL11BQ9C0K0 894 aaPredicted RBP18.84■□□□□ 0.61
PTPRF-201ENST00000359947 INTS3Q68E01 1043 aaKnown RBP18.84■□□□□ 0.61
PTPRF-201ENST00000359947 SIL1Q9H173 461 aa18.84■□□□□ 0.61
PTPRF-201ENST00000359947 ODF2Q5BJF6 829 aa18.83■□□□□ 0.61
PTPRF-201ENST00000359947 PRKAR2BP31323 418 aa18.83■□□□□ 0.61
PTPRF-201ENST00000359947 EPS15P42566 896 aa18.83■□□□□ 0.61
PTPRF-201ENST00000359947 CDK19Q9BWU1 502 aa18.83■□□□□ 0.6
PTPRF-201ENST00000359947 TTC39AQ5SRH9 613 aa18.83■□□□□ 0.6
PTPRF-201ENST00000359947 BRMS1Q9HCU9 246 aa18.83■□□□□ 0.6
PTPRF-201ENST00000359947 C1orf115Q9H7X2 142 aa18.82■□□□□ 0.6
PTPRF-201ENST00000359947 PRDM11Q9NQV5 511 aa18.82■□□□□ 0.6
PTPRF-201ENST00000359947 GAS2L2Q8NHY3 880 aa18.82■□□□□ 0.6
PTPRF-201ENST00000359947 PRG4Q92954 1404 aaPredicted RBP18.81■□□□□ 0.6
PTPRF-201ENST00000359947 ANKLE2Q86XL3 938 aa18.81■□□□□ 0.6
PTPRF-201ENST00000359947 CCDC70Q6NSX1 233 aa18.8■□□□□ 0.6
PTPRF-201ENST00000359947 SULT6B1Q6IMI4 303 aa18.8■□□□□ 0.6
PTPRF-201ENST00000359947 CABP1Q9NZU7 370 aa18.8■□□□□ 0.6
PTPRF-201ENST00000359947 IBSPP21815 317 aaPredicted RBP18.8■□□□□ 0.6
PTPRF-201ENST00000359947 ZC3H6P61129 1189 aaKnown RBP18.8■□□□□ 0.6
PTPRF-201ENST00000359947 SPINK5Q9NQ38 1064 aaPredicted RBP18.8■□□□□ 0.6
PTPRF-201ENST00000359947 ANKRD50Q9ULJ7 1429 aa18.8■□□□□ 0.6
PTPRF-201ENST00000359947 PAF1Q8N7H5 531 aa18.79■□□□□ 0.6
PTPRF-201ENST00000359947 CNTROBQ8N137 903 aa18.79■□□□□ 0.6
PTPRF-201ENST00000359947 CLASRPQ8N2M8 674 aaKnown RBP18.79■□□□□ 0.6
PTPRF-201ENST00000359947 IGF1RP08069 1367 aa18.79■□□□□ 0.6
PTPRF-201ENST00000359947 HOMER1Q86YM7 354 aa18.78■□□□□ 0.6
PTPRF-201ENST00000359947 XBP1P17861 261 aa18.78■□□□□ 0.6
PTPRF-201ENST00000359947 CCDC85AQ96PX6 553 aaPredicted RBP18.78■□□□□ 0.6
PTPRF-201ENST00000359947 SART3Q15020 963 aaKnown RBP18.77■□□□□ 0.6
PTPRF-201ENST00000359947 ZNF530Q6P9A1 599 aaPredicted RBP18.77■□□□□ 0.6
PTPRF-201ENST00000359947 WWC2Q6AWC2 1192 aa18.77■□□□□ 0.6
PTPRF-201ENST00000359947 ZBED9Q6R2W3 1325 aa18.77■□□□□ 0.6
PTPRF-201ENST00000359947 SASS6Q6UVJ0 657 aa18.77■□□□□ 0.6
PTPRF-201ENST00000359947 ZSCAN29Q8IWY8 852 aaPredicted RBP18.77■□□□□ 0.6
PTPRF-201ENST00000359947 ADAMTS8Q9UP79 889 aa18.77■□□□□ 0.59
PTPRF-201ENST00000359947 SLC3A2P08195 630 aaKnown RBP18.76■□□□□ 0.59
PTPRF-201ENST00000359947 MAP4K4O95819 1239 aaPredicted RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms