RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 USP47Q96K76 1375 aa17.93■□□□□ 0.46
LMX1B-201ENST00000355497 MTERF4Q7Z6M4 381 aaKnown RBP17.93■□□□□ 0.46
LMX1B-201ENST00000355497 H0YHG0 523 aa17.93■□□□□ 0.46
LMX1B-201ENST00000355497 RDXP35241 583 aaKnown RBP17.93■□□□□ 0.46
LMX1B-201ENST00000355497 LETM1O95202 739 aaPredicted RBP17.92■□□□□ 0.46
LMX1B-201ENST00000355497 NASPP49321 788 aaPredicted RBP17.92■□□□□ 0.46
LMX1B-201ENST00000355497 NINLQ9Y2I6 1382 aa17.92■□□□□ 0.46
LMX1B-201ENST00000355497 MRE11P49959 708 aa17.92■□□□□ 0.46
LMX1B-201ENST00000355497 ZFYVE27Q5T4F4 411 aa17.92■□□□□ 0.46
LMX1B-201ENST00000355497 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.92■□□□□ 0.46
LMX1B-201ENST00000355497 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.92■□□□□ 0.46
LMX1B-201ENST00000355497 XBP1P17861 261 aa17.92■□□□□ 0.46
LMX1B-201ENST00000355497 ABCC8Q09428 1581 aa17.92■□□□□ 0.46
LMX1B-201ENST00000355497 MINK1Q8N4C8 1332 aaPredicted RBP17.91■□□□□ 0.46
LMX1B-201ENST00000355497 CDC45O75419 566 aa17.91■□□□□ 0.46
LMX1B-201ENST00000355497 BCL11BQ9C0K0 894 aaPredicted RBP17.91■□□□□ 0.46
LMX1B-201ENST00000355497 RUNDC1Q96C34 613 aa17.91■□□□□ 0.46
LMX1B-201ENST00000355497 PSMA5P28066 241 aa17.9■□□□□ 0.46
LMX1B-201ENST00000355497 WASHC4Q2M389 1173 aa17.9■□□□□ 0.46
LMX1B-201ENST00000355497 GNAI1P63096 354 aa17.89■□□□□ 0.46
LMX1B-201ENST00000355497 LNPKQ9C0E8 428 aa17.89■□□□□ 0.46
LMX1B-201ENST00000355497 FHOD3Q2V2M9 1422 aa17.89■□□□□ 0.45
LMX1B-201ENST00000355497 SDF4Q9BRK5 362 aa17.89■□□□□ 0.45
LMX1B-201ENST00000355497 CCP110O43303 1012 aa17.89■□□□□ 0.45
LMX1B-201ENST00000355497 TSPYL4Q9UJ04 414 aa17.89■□□□□ 0.45
LMX1B-201ENST00000355497 RBM33Q96EV2 1170 aaKnown RBP17.89■□□□□ 0.45
LMX1B-201ENST00000355497 AAMPQ13685 434 aa17.88■□□□□ 0.45
LMX1B-201ENST00000355497 NEUROD6Q96NK8 337 aa17.88■□□□□ 0.45
LMX1B-201ENST00000355497 TTLL5Q6EMB2 1281 aa17.88■□□□□ 0.45
LMX1B-201ENST00000355497 SYTL4Q96C24 671 aaPredicted RBP17.88■□□□□ 0.45
LMX1B-201ENST00000355497 SAMD1Q6SPF0 538 aaPredicted RBP17.88■□□□□ 0.45
LMX1B-201ENST00000355497 FYB1O15117 783 aa17.87■□□□□ 0.45
LMX1B-201ENST00000355497 SMARCE1Q969G3 411 aa17.87■□□□□ 0.45
LMX1B-201ENST00000355497 NFKBIBQ15653 356 aa17.87■□□□□ 0.45
LMX1B-201ENST00000355497 TDRD9Q8NDG6 1382 aaKnown RBP17.87■□□□□ 0.45
LMX1B-201ENST00000355497 CCDC66A2RUB6 948 aa17.86■□□□□ 0.45
LMX1B-201ENST00000355497 PDS5BQ9NTI5 1447 aa17.86■□□□□ 0.45
LMX1B-201ENST00000355497 SMC2O95347 1197 aa17.86■□□□□ 0.45
LMX1B-201ENST00000355497 CCDC27Q2M243 656 aa17.86■□□□□ 0.45
LMX1B-201ENST00000355497 TRIM5Q9C035 493 aa17.86■□□□□ 0.45
LMX1B-201ENST00000355497 CNTROBQ8N137 903 aa17.86■□□□□ 0.45
LMX1B-201ENST00000355497 RIC3Q7Z5B4 369 aa17.85■□□□□ 0.45
LMX1B-201ENST00000355497 TSPY26PQ9H489 355 aa17.85■□□□□ 0.45
LMX1B-201ENST00000355497 RNF214Q8ND24 703 aa17.85■□□□□ 0.45
LMX1B-201ENST00000355497 FILIP1LQ4L180 1135 aa17.84■□□□□ 0.45
LMX1B-201ENST00000355497 MAGEC2Q9UBF1 373 aaPredicted RBP17.84■□□□□ 0.45
LMX1B-201ENST00000355497 SKIDA1Q1XH10 827 aa17.84■□□□□ 0.45
LMX1B-201ENST00000355497 DHX57Q6P158 1386 aaKnown RBP17.84■□□□□ 0.45
LMX1B-201ENST00000355497 PLCD4Q9BRC7 762 aa17.83■□□□□ 0.45
LMX1B-201ENST00000355497 UBTFL1P0CB47 393 aaPredicted RBP17.83■□□□□ 0.45
LMX1B-201ENST00000355497 CCDC88BA6NC98 1476 aa17.83■□□□□ 0.44
LMX1B-201ENST00000355497 KIF7Q2M1P5 1343 aa17.83■□□□□ 0.44
LMX1B-201ENST00000355497 CECR2Q9BXF3 1484 aa17.83■□□□□ 0.44
LMX1B-201ENST00000355497 RAPGEF2Q9Y4G8 1499 aa17.83■□□□□ 0.44
LMX1B-201ENST00000355497 PSME1Q06323 249 aa17.82■□□□□ 0.44
LMX1B-201ENST00000355497 SART3Q15020 963 aaKnown RBP17.82■□□□□ 0.44
LMX1B-201ENST00000355497 LEKR1Q6ZMV7 388 aa17.82■□□□□ 0.44
LMX1B-201ENST00000355497 KINO60870 393 aaKnown RBP17.82■□□□□ 0.44
LMX1B-201ENST00000355497 MBD3O95983 291 aa17.82■□□□□ 0.44
LMX1B-201ENST00000355497 FSD1Q9BTV5 496 aa17.82■□□□□ 0.44
LMX1B-201ENST00000355497 KDM4AO75164 1064 aa17.81■□□□□ 0.44
LMX1B-201ENST00000355497 CAVIN1Q6NZI2 390 aaKnown RBP17.81■□□□□ 0.44
LMX1B-201ENST00000355497 TSPYL1Q9H0U9 437 aa17.81■□□□□ 0.44
LMX1B-201ENST00000355497 CDK5RAP3Q96JB5 506 aa17.81■□□□□ 0.44
LMX1B-201ENST00000355497 TRAK2O60296 914 aa17.8■□□□□ 0.44
LMX1B-201ENST00000355497 AIMP1Q12904 312 aaKnown RBP17.8■□□□□ 0.44
LMX1B-201ENST00000355497 AXDND1Q5T1B0 1012 aaPredicted RBP17.8■□□□□ 0.44
LMX1B-201ENST00000355497 PIP4K2AP48426 406 aaPredicted RBP17.8■□□□□ 0.44
LMX1B-201ENST00000355497 MTMR7Q9Y216 660 aa17.8■□□□□ 0.44
LMX1B-201ENST00000355497 PANK1Q8TE04 598 aa17.79■□□□□ 0.44
LMX1B-201ENST00000355497 ZNF396Q96N95 335 aaPredicted RBP17.79■□□□□ 0.44
LMX1B-201ENST00000355497 SYCP1Q15431 976 aa17.79■□□□□ 0.44
LMX1B-201ENST00000355497 TXLNAP40222 546 aa17.79■□□□□ 0.44
LMX1B-201ENST00000355497 ZRSR2Q15696 482 aaKnown RBP17.79■□□□□ 0.44
LMX1B-201ENST00000355497 IKQ13123 557 aaPredicted RBP17.79■□□□□ 0.44
LMX1B-201ENST00000355497 ERLIN2O94905 339 aa17.78■□□□□ 0.44
LMX1B-201ENST00000355497 TBC1D2BQ9UPU7 963 aa17.78■□□□□ 0.44
LMX1B-201ENST00000355497 RAPGEF4Q8WZA2 1011 aa17.78■□□□□ 0.44
LMX1B-201ENST00000355497 TMEM132AQ24JP5 1023 aa17.77■□□□□ 0.44
LMX1B-201ENST00000355497 HMOX1P09601 288 aa17.77■□□□□ 0.44
LMX1B-201ENST00000355497 MEX3CQ5U5Q3 659 aaKnown RBP17.77■□□□□ 0.44
LMX1B-201ENST00000355497 HIP1O00291 1037 aa17.77■□□□□ 0.43
LMX1B-201ENST00000355497 BRPF1P55201 1214 aaPredicted RBP17.77■□□□□ 0.43
LMX1B-201ENST00000355497 MCM2P49736 904 aa17.76■□□□□ 0.43
LMX1B-201ENST00000355497 HMGN5P82970 282 aaKnown RBP17.76■□□□□ 0.43
LMX1B-201ENST00000355497 CCAR1Q8IX12 1150 aaKnown RBP17.76■□□□□ 0.43
LMX1B-201ENST00000355497 PDCP20941 246 aa17.76■□□□□ 0.43
LMX1B-201ENST00000355497 WWC2Q6AWC2 1192 aa17.76■□□□□ 0.43
LMX1B-201ENST00000355497 PRPF40AO75400 957 aaKnown RBP17.76■□□□□ 0.43
LMX1B-201ENST00000355497 DHX8Q14562 1220 aaKnown RBP17.75■□□□□ 0.43
LMX1B-201ENST00000355497 GOLGA6L10A6NI86 522 aa17.75■□□□□ 0.43
LMX1B-201ENST00000355497 CT47B1P0C2W7 299 aaPredicted RBP17.75■□□□□ 0.43
LMX1B-201ENST00000355497 HSP90AB3PQ58FF7 597 aa17.75■□□□□ 0.43
LMX1B-201ENST00000355497 FMNL2Q96PY5 1086 aa17.75■□□□□ 0.43
LMX1B-201ENST00000355497 DNAJC2Q99543 621 aaKnown RBP17.75■□□□□ 0.43
LMX1B-201ENST00000355497 ZNHIT6Q9NWK9 470 aaKnown RBP17.75■□□□□ 0.43
LMX1B-201ENST00000355497 KRT18P05783 430 aaKnown RBP17.75■□□□□ 0.43
LMX1B-201ENST00000355497 SLC3A2P08195 630 aaKnown RBP17.75■□□□□ 0.43
LMX1B-201ENST00000355497 NEFHP12036 1026 aa17.74■□□□□ 0.43
LMX1B-201ENST00000355497 CLASRPQ8N2M8 674 aaKnown RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms