RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 OR7A2PQ8NGA2 310 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 DCP1AQ9NPI6 582 aaPredicted RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 ZNF302Q9NR11 478 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 PCDHA6Q9UN73 950 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 PCDHA8Q9Y5H6 950 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 A0A0G2JPF8 293 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 TMEM247A6NEH6 219 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 HNRNPCL3B7ZW38 293 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 CLIC2O15247 247 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 HNRNPCL4P0DMR1 293 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 VEGFAP15692 232 aaPredicted RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 EXOSC10Q01780 885 aaKnown RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 MAPK7Q13164 816 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 SCARA3Q6AZY7 606 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 ACTRT1Q8TDG2 376 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 NUP85Q9BW27 656 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 CELF4Q9BZC1 486 aaKnown RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 ELP3Q9H9T3 547 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 KIDINS220Q9ULH0 1771 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 DPYSL4O14531 572 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 KIAA0391O15091 583 aaKnown RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 ENTPD5O75356 428 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 SLC1A1P43005 524 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 RAP1GAPP47736 663 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 GMPSP49915 693 aaPredicted RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 TRIP4Q15650 581 aaPredicted RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 UNC45BQ8IWX7 931 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 PM20D2Q8IYS1 436 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 SYTL2Q9HCH5 934 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 ABCB10Q9NRK6 738 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 MAP3K20Q9NYL2 800 aaKnown RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 NYAP2Q9P242 653 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 PXDNLA1KZ92 1463 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 CBX6O95503 412 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 PLA2G4BP0C869 781 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 PIK3R1P27986 724 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 PSMB9P28065 219 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 AP3M2P53677 418 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 SNAP25P60880 206 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 SH3BP5LQ7L8J4 393 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 ZNF398Q8TD17 642 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 PGBD4Q96DM1 585 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 HEXIM2Q96MH2 286 aaKnown RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 EBF2Q9HAK2 575 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 MEIS1O00470 390 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 MAP3K13O43283 966 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 DDX5P17844 614 aaKnown RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 PRDX5P30044 214 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 NUP62P37198 522 aaPredicted RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 NR5A1Q13285 461 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 TAGAPQ8N103 731 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 RAVER2Q9HCJ3 691 aaKnown RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 MYOZ2Q9NPC6 264 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 ENTPD7Q9NQZ7 604 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 PRG3Q9Y2Y8 225 aaPredicted RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 NEMP1O14524 444 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 FCHO1O14526 889 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 PAMP19021 973 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 SLC9A3P48764 834 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 PHC1P78364 1004 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 RABL6Q3YEC7 729 aaPredicted RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 LAYNQ6UX15 382 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 SIRT2Q8IXJ6 389 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 TINF2Q9BSI4 451 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 MSTO1Q9BUK6 570 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 NEUROG2Q9H2A3 272 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 M0QX08 132 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 ADSLP30566 484 aaPredicted RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 ATP13A5Q4VNC0 1218 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 CCDC28AQ8IWP9 274 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 DEFB107AQ8IZN7 70 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 SH3KBP1Q96B97 665 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 OXNAD1Q96HP4 312 aaPredicted RBP13.73□□□□□ -0.21
USP40-208ENST00000450966 DNAJC7Q99615 494 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 ZNF556Q9HAH1 456 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 ZSWIM5Q9P217 1185 aa13.73□□□□□ -0.21
USP40-208ENST00000450966 GLI1P08151 1106 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 FOSL2P15408 326 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 FOLH1Q04609 750 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 TOP3AQ13472 1001 aaPredicted RBP13.72□□□□□ -0.21
USP40-208ENST00000450966 SBK1Q52WX2 424 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 C12orf60Q5U649 245 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 CCDC36Q8IYA8 594 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 SLC25A41Q8N5S1 370 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 WDR36Q8NI36 951 aaKnown RBP13.72□□□□□ -0.21
USP40-208ENST00000450966 GANCQ8TET4 914 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 SYN2Q92777 582 aaPredicted RBP13.72□□□□□ -0.21
USP40-208ENST00000450966 FAXDC2Q96IV6 333 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 NUDT12Q9BQG2 462 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 TMEM47Q9BQJ4 181 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 C9orf16Q9BUW7 83 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 KIAA1210Q9ULL0 1709 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 MST1RQ04912 1400 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 CELF2O95319 508 aaKnown RBP13.72□□□□□ -0.21
USP40-208ENST00000450966 FASP25445 335 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 FLT3P36888 993 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 CDK17Q00537 523 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 CACNB1Q02641 598 aaPredicted RBP13.72□□□□□ -0.21
USP40-208ENST00000450966 QPRTQ15274 297 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 BNIPLQ7Z465 357 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms