RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 TXNRD3NBQ6F5E7 133 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 TMC3Q7Z5M5 1100 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 METTL23Q86XA0 190 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 B3GALNT2Q8NCR0 500 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 ATG4AQ8WYN0 398 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 RNF25Q96BH1 459 aaPredicted RBP23.73■■□□□ 1.39
CDX1-201ENST00000231656 FMO2Q99518 471 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 TXLNGYQ9BZA5 131 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 CWH43Q9H720 699 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 MARCH5Q9NX47 278 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 ADAM21Q9UKJ8 722 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 ADAM28Q9UKQ2 775 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 PCDHB8Q9UN66 801 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 ZBBXA8MT70 800 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 TRAPPC3O43617 180 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 KRT1P04264 644 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 TYMPP19971 482 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 PBX3P40426 434 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 SNX1Q13596 522 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 TMEM240Q5SV17 173 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 ARFGAP1Q8N6T3 406 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 RUFY1Q96T51 708 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 HOMER3Q9NSC5 361 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 ZMYND8Q9ULU4 1186 aaPredicted RBP23.72■■□□□ 1.39
CDX1-201ENST00000231656 VWA8A3KMH1 1905 aa23.72■■□□□ 1.39
CDX1-201ENST00000231656 NT5C1B-RDH14C9J2C7 533 aa23.71■■□□□ 1.39
CDX1-201ENST00000231656 ATP2C2O75185 946 aa23.71■■□□□ 1.39
CDX1-201ENST00000231656 PTPN7P35236 360 aa23.71■■□□□ 1.39
CDX1-201ENST00000231656 BCAR1P56945 870 aa23.71■■□□□ 1.39
CDX1-201ENST00000231656 SLC25A11Q02978 314 aaKnown RBP23.71■■□□□ 1.39
CDX1-201ENST00000231656 KIAA0319Q5VV43 1072 aa23.71■■□□□ 1.39
CDX1-201ENST00000231656 PSRC1Q6PGN9 363 aaPredicted RBP23.71■■□□□ 1.39
CDX1-201ENST00000231656 POLNQ7Z5Q5 900 aa23.71■■□□□ 1.39
CDX1-201ENST00000231656 IPO4Q8TEX9 1081 aaKnown RBP23.71■■□□□ 1.39
CDX1-201ENST00000231656 RTP3Q9BQQ7 232 aa23.71■■□□□ 1.39
CDX1-201ENST00000231656 DDX56Q9NY93 547 aaKnown RBP23.71■■□□□ 1.39
CDX1-201ENST00000231656 GOLGA8KD6RF30 607 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 PI4K2BG5E9Z4 385 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 PPFIA2O75334 1257 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 PTPN1P18031 435 aaKnown RBP23.7■■□□□ 1.39
CDX1-201ENST00000231656 CETN2P41208 172 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 COPS2P61201 443 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 CCNG2Q16589 344 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 ARHGAP17Q68EM7 881 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 OVOS1Q6IE37 1185 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 MFSD7Q6UXD7 560 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 TTC30AQ86WT1 665 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 EMC1Q8N766 993 aa23.7■■□□□ 1.39
CDX1-201ENST00000231656 LRCH4O75427 683 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 CCDC130P13994 396 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 ALDH7A1P49419 539 aaKnown RBP23.7■■□□□ 1.38
CDX1-201ENST00000231656 PLTPP55058 493 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 CCDC142Q17RM4 750 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 SPOCD1Q6ZMY3 1216 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 SYDE1Q6ZW31 735 aaPredicted RBP23.7■■□□□ 1.38
CDX1-201ENST00000231656 TMEM173Q86WV6 379 aaPredicted RBP23.7■■□□□ 1.38
CDX1-201ENST00000231656 FBXO25Q8TCJ0 367 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 DPF3Q92784 378 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 EXOC4Q96A65 974 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 SYT15Q9BQS2 421 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 FAM204AQ9H8W3 233 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 CXXC1Q9P0U4 656 aaPredicted RBP23.7■■□□□ 1.38
CDX1-201ENST00000231656 PLAAQ9Y263 795 aa23.7■■□□□ 1.38
CDX1-201ENST00000231656 SETSIPP0DME0 302 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 PCSK1P29120 753 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 TKTP29401 623 aaKnown RBP23.69■■□□□ 1.38
CDX1-201ENST00000231656 KRT17Q04695 432 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 YWHAHQ04917 246 aaPredicted RBP23.69■■□□□ 1.38
CDX1-201ENST00000231656 DHX9Q08211 1270 aaKnown RBP23.69■■□□□ 1.38
CDX1-201ENST00000231656 ADCY2Q08462 1091 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 MTMR3Q13615 1198 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 PPP1R7Q15435 360 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 GLIPR1L2Q4G1C9 344 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 LRIG3Q6UXM1 1119 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 CMTR2Q8IYT2 770 aaKnown RBP23.69■■□□□ 1.38
CDX1-201ENST00000231656 RAPGEF5Q92565 580 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 ARL8AQ96BM9 186 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 ACBD6Q9BR61 282 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 GPR62Q9BZJ7 368 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 MIS12Q9H081 205 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 CRTAC1Q9NQ79 661 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 CDH9Q9ULB4 789 aa23.69■■□□□ 1.38
CDX1-201ENST00000231656 CCDC85CA6NKD9 419 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 E5RJQ4 531 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 H0YGN5 161 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 PTK6Q13882 451 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 BTG3Q14201 252 aaPredicted RBP23.68■■□□□ 1.38
CDX1-201ENST00000231656 FAM102AQ5T9C2 384 aaPredicted RBP23.68■■□□□ 1.38
CDX1-201ENST00000231656 FAM183BPQ6ZVS7 135 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 GOLGA6L1Q8N7Z2 621 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 SLC2A14Q8TDB8 520 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 GRK7Q8WTQ7 553 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 BCL7CQ8WUZ0 217 aaPredicted RBP23.68■■□□□ 1.38
CDX1-201ENST00000231656 ACSF2Q96CM8 615 aaPredicted RBP23.68■■□□□ 1.38
CDX1-201ENST00000231656 SLC4A5Q9BY07 1137 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 NFS1Q9Y697 457 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 hCG_1818297A0A087WSY0 165 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 SYN3O14994 580 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 KRT10P13645 584 aa23.68■■□□□ 1.38
CDX1-201ENST00000231656 IL1R2P27930 398 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms