RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 OVGP1Q12889 678 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 ACAP1Q15027 740 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 EZH2Q15910 746 aaKnown RBP13.76□□□□□ -0.21
USP40-208ENST00000450966 SYTL1Q8IYJ3 562 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 KCNB2Q92953 911 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 TRIM62Q9BVG3 475 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 SPATA16Q9BXB7 569 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 CNOT8Q9UFF9 292 aaKnown RBP13.76□□□□□ -0.21
USP40-208ENST00000450966 DOLKQ9UPQ8 538 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 CLOCKO15516 846 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 NCALDP61601 193 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 TFDP2Q14188 446 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 MAPK6Q16659 721 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 ARL13BQ3SXY8 428 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 OR6B2Q6IFH4 312 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 DSTYKQ6XUX3 929 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 UNC13DQ70J99 1090 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 RASGRP4Q8TDF6 673 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 C1orf54Q8WWF1 131 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 C9orf72Q96LT7 481 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 TIPINQ9BVW5 301 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 MTFR1Q15390 333 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 UMODL1Q5DID0 1318 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 KBTBD2Q8IY47 623 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 PREX1Q8TCU6 1659 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 OSCP1Q8WVF1 389 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 OSBP2Q969R2 916 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 HEMGNQ9BXL5 484 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 RUBCNLQ9H714 662 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 NEU2Q9Y3R4 380 aa13.76□□□□□ -0.21
USP40-208ENST00000450966 FOSL1P15407 271 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 GEMIN4P57678 1058 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 ARHGAP17Q68EM7 881 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 XRRA1Q6P2D8 792 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 KCTD4Q8WVF5 259 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 CALN1Q9BXU9 219 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PUS7LQ9H0K6 701 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 TRMT6Q9UJA5 497 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 TM9SF1O15321 606 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 SNRPAP09012 282 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 RAD23AP54725 363 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 LGALS3BPQ08380 585 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PTK7Q13308 1070 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 CHI3L2Q15782 390 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 SMU1Q2TAY7 513 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 MZT2BQ6NZ67 158 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ANKRD23Q86SG2 305 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ZBTB33Q86T24 672 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 MREGQ8N565 214 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 NEDD1Q8NHV4 660 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ANKS1AQ92625 1134 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 DYNLL2Q96FJ2 89 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 STK33Q9BYT3 514 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PCIF1Q9H4Z3 704 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ING3Q9NXR8 418 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 FAM196BA6NMK8 535 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ALDH1A3P47895 512 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PRELPP51888 382 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 HUNKP57058 714 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 EEPD1Q7L9B9 569 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 KRT74Q7RTS7 529 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 TOR1AIP2Q8NFQ8 470 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ACAT2Q9BWD1 397 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 GDF3Q9NR23 364 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ZNF224Q9NZL3 707 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 GRID1Q9ULK0 1009 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PRPSAP2O60256 369 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 SEC24AO95486 1093 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ARSEP51690 589 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 FMR1Q06787 632 aaKnown RBP eCLIP13.75□□□□□ -0.21
USP40-208ENST00000450966 MAPRE1Q15691 268 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 SHC4Q6S5L8 630 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 TRPV5Q9NQA5 729 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PNPLA3Q9NST1 481 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 STARD13Q9Y3M8 1113 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 ZNF23P17027 643 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 TKTP29401 623 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 TRAP1Q12931 704 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 GRM4Q14833 912 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 MEI1Q5TIA1 1274 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 TTC39BQ5VTQ0 682 aaPredicted RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 TTC30AQ86WT1 665 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 SRBD1Q8N5C6 995 aaKnown RBP13.75□□□□□ -0.21
USP40-208ENST00000450966 SAMD3Q8N6K7 520 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PLEKHA8Q96JA3 519 aa13.75□□□□□ -0.21
USP40-208ENST00000450966 PVALEFA0A1B0GWK0 134 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 EME2A4GXA9 379 aaPredicted RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 SPDYE5A6NIY4 337 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 K7ERI5 159 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 ATP6V1E1P36543 226 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 RHPN2Q8IUC4 686 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 RHOT1Q8IXI2 618 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 CHST13Q8NET6 341 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 FAM84BQ96KN1 310 aaPredicted RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 ZNF70Q9UC06 446 aaPredicted RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 PRKAB2O43741 272 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 ASS1P00966 412 aaKnown RBP13.74□□□□□ -0.21
USP40-208ENST00000450966 SCARF1Q14162 830 aa13.74□□□□□ -0.21
USP40-208ENST00000450966 EDRF1Q3B7T1 1238 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms