RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W YDR034C-AP0C289 58 aa6.97□□□□□ -1.29
UBA4YHR111W AQY1P0CD91 305 aa6.97□□□□□ -1.29
UBA4YHR111W PRE1P22141 198 aaKnown RBP6.97□□□□□ -1.29
UBA4YHR111W SEC72P39742 193 aaKnown RBP6.96□□□□□ -1.3
UBA4YHR111W YER085CP40058 173 aa6.96□□□□□ -1.3
UBA4YHR111W GTT1P40582 234 aa6.96□□□□□ -1.3
UBA4YHR111W TOS6P48560 102 aa6.96□□□□□ -1.3
UBA4YHR111W YOR008C-AQ3E7B9 74 aa6.96□□□□□ -1.3
UBA4YHR111W CYT2Q00873 224 aa6.95□□□□□ -1.3
UBA4YHR111W PCL2P25693 308 aa6.94□□□□□ -1.3
UBA4YHR111W SOH1P38633 127 aa6.94□□□□□ -1.3
UBA4YHR111W YCL021W-AQ96VH3 125 aa6.94□□□□□ -1.3
UBA4YHR111W YEL008WP40001 126 aa6.93□□□□□ -1.3
UBA4YHR111W OST3P48439 350 aa6.93□□□□□ -1.3
UBA4YHR111W YGL118CP53132 145 aa6.93□□□□□ -1.3
UBA4YHR111W PKR1Q03880 122 aaKnown RBP6.93□□□□□ -1.3
UBA4YHR111W RPC10P40422 70 aa6.92□□□□□ -1.3
UBA4YHR111W URM1P40554 99 aaPredicted RBP6.92□□□□□ -1.3
UBA4YHR111W MED7Q08278 222 aa6.92□□□□□ -1.3
UBA4YHR111W ENV10Q99382 181 aa6.92□□□□□ -1.3
UBA4YHR111W YBL081WP38180 368 aaKnown RBP6.91□□□□□ -1.3
UBA4YHR111W YAL064WP39711 94 aa6.91□□□□□ -1.3
UBA4YHR111W YBR219CP38317 127 aa6.9□□□□□ -1.3
UBA4YHR111W ERV14P53173 138 aa6.89□□□□□ -1.31
UBA4YHR111W HMRA2P0CY13 119 aa6.88□□□□□ -1.31
UBA4YHR111W GSP1P32835 219 aaKnown RBP6.88□□□□□ -1.31
UBA4YHR111W GSP2P32836 220 aaKnown RBP6.88□□□□□ -1.31
UBA4YHR111W YAR029WP39549 74 aa6.88□□□□□ -1.31
UBA4YHR111W CIN5P40917 295 aa6.87□□□□□ -1.31
UBA4YHR111W YLR194CQ05777 254 aa6.87□□□□□ -1.31
UBA4YHR111W YDR029WQ12111 104 aa6.87□□□□□ -1.31
UBA4YHR111W TPT1Q12272 230 aaKnown RBP6.87□□□□□ -1.31
UBA4YHR111W SNA2P56508 79 aa6.85□□□□□ -1.31
UBA4YHR111W YDR042CQ03205 200 aa6.85□□□□□ -1.31
UBA4YHR111W YMR295CQ03559 197 aa6.85□□□□□ -1.31
UBA4YHR111W DFM1Q12743 341 aaKnown RBP6.85□□□□□ -1.31
UBA4YHR111W YMR175W-AQ3E766 64 aa6.85□□□□□ -1.31
UBA4YHR111W COA3Q3E7B2 85 aa6.85□□□□□ -1.31
UBA4YHR111W HTL1Q9URQ5 78 aa6.85□□□□□ -1.31
UBA4YHR111W RPL31AP0C2H8 113 aaKnown RBP6.84□□□□□ -1.31
UBA4YHR111W YER134CP40081 178 aa6.84□□□□□ -1.31
UBA4YHR111W ARL3Q02804 198 aa6.84□□□□□ -1.31
UBA4YHR111W APS1P35181 156 aa6.83□□□□□ -1.32
UBA4YHR111W YLR112WQ12130 139 aa6.83□□□□□ -1.32
UBA4YHR111W POP3P53833 195 aaPredicted RBP6.81□□□□□ -1.32
UBA4YHR111W RPL27BP0C2H7 136 aaKnown RBP6.8□□□□□ -1.32
UBA4YHR111W ATP15P21306 62 aa6.8□□□□□ -1.32
UBA4YHR111W SMP1P38128 452 aa6.79□□□□□ -1.32
UBA4YHR111W VTC1P40046 129 aaRIP-Chip data6.79□□□□□ -1.32not detected
UBA4YHR111W CMC2Q3E7A4 109 aa6.79□□□□□ -1.32
UBA4YHR111W YLR307C-AQ3E825 87 aa6.79□□□□□ -1.32
UBA4YHR111W YAL065CO13511 128 aa6.78□□□□□ -1.32
UBA4YHR111W LCL1Q02786 101 aa6.77□□□□□ -1.32
UBA4YHR111W YMR103CQ04436 120 aa6.77□□□□□ -1.32
UBA4YHR111W YKL070WP36087 169 aa6.76□□□□□ -1.33
UBA4YHR111W FYV4P38783 130 aaPredicted RBP6.76□□□□□ -1.33
UBA4YHR111W YDL241WQ07738 123 aa6.76□□□□□ -1.33
UBA4YHR111W PEX22P39718 180 aa6.75□□□□□ -1.33
UBA4YHR111W YML108WQ03759 105 aa6.75□□□□□ -1.33
UBA4YHR111W COX14P39103 70 aa6.74□□□□□ -1.33
UBA4YHR111W TMA7Q3E764 64 aaKnown RBP6.74□□□□□ -1.33
UBA4YHR111W SHU1P38751 150 aa6.73□□□□□ -1.33
UBA4YHR111W AIM11P87275 137 aa6.72□□□□□ -1.33
UBA4YHR111W TIM11P81449 96 aaPredicted RBP6.71□□□□□ -1.34
UBA4YHR111W ECM12O13529 151 aa6.7□□□□□ -1.34
UBA4YHR111W AQY2P0CD90 149 aa6.7□□□□□ -1.34
UBA4YHR111W MRPL33P20084 86 aa6.7□□□□□ -1.34
UBA4YHR111W TOA2P32774 122 aa6.7□□□□□ -1.34
UBA4YHR111W YFL067WP43537 175 aa6.7□□□□□ -1.34
UBA4YHR111W MMS2P53152 137 aa6.7□□□□□ -1.34
UBA4YHR111W CUE4Q04201 117 aaPredicted RBP6.7□□□□□ -1.34
UBA4YHR111W PPT2Q12036 173 aa6.7□□□□□ -1.34
UBA4YHR111W YKL069WP36088 180 aa6.69□□□□□ -1.34
UBA4YHR111W RPL32P38061 130 aaKnown RBP6.69□□□□□ -1.34
UBA4YHR111W YGL041C-BQ3E750 60 aa6.69□□□□□ -1.34
UBA4YHR111W CWP2P43497 92 aa6.68□□□□□ -1.34
UBA4YHR111W YPL261CQ08976 102 aa6.68□□□□□ -1.34
UBA4YHR111W YDL022C-AP0C5L6 82 aa6.67□□□□□ -1.34
UBA4YHR111W RPL18AP0CX49 186 aaKnown RBP6.67□□□□□ -1.34
UBA4YHR111W RPL18BP0CX50 186 aaKnown RBP6.67□□□□□ -1.34
UBA4YHR111W SSS1P35179 80 aa6.67□□□□□ -1.34
UBA4YHR111W PAU16P35994 123 aa6.67□□□□□ -1.34
UBA4YHR111W OXA1P39952 402 aa6.67□□□□□ -1.34
UBA4YHR111W PEX17P40155 199 aa6.67□□□□□ -1.34
UBA4YHR111W SMD1Q02260 146 aaPredicted RBP6.67□□□□□ -1.34
UBA4YHR111W RPF1P38805 295 aaKnown RBP6.66□□□□□ -1.34
UBA4YHR111W YLR050CQ12155 161 aaKnown RBP6.66□□□□□ -1.34
UBA4YHR111W ADH1P00330 348 aaKnown RBP6.65□□□□□ -1.35
UBA4YHR111W AIM19P40502 157 aa6.65□□□□□ -1.35
UBA4YHR111W YKR041WP36134 250 aa6.64□□□□□ -1.35
UBA4YHR111W ABF2Q02486 183 aa6.64□□□□□ -1.35
UBA4YHR111W CNL1Q06333 122 aa6.64□□□□□ -1.35
UBA4YHR111W STF1P01098 86 aa6.63□□□□□ -1.35
UBA4YHR111W MRPL11P36521 249 aaPredicted RBP6.63□□□□□ -1.35
UBA4YHR111W SEN15Q04675 128 aa6.63□□□□□ -1.35
UBA4YHR111W YIL134C-AQ45U18 67 aa6.63□□□□□ -1.35
UBA4YHR111W SCS22Q6Q595 175 aa6.63□□□□□ -1.35
UBA4YHR111W QCR8P08525 94 aa6.62□□□□□ -1.35
UBA4YHR111W MVB12P42939 101 aa6.62□□□□□ -1.35
UBA4YHR111W ATP16Q12165 160 aa6.62□□□□□ -1.35
Retrieved 100 of 5,963 RNA–protein pairs in 50.4 ms