RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CD19P15391 556 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 CEBPBP17676 345 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 RFX1P22670 979 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 GABRR2P28476 465 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 SSTR3P32745 418 aaPredicted RBP21.51■■□□□ 1.03
PTCD3-220ENST00000627371 ZNF445P59923 1031 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 UBXN1Q04323 297 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 ARHGAP44Q17R89 818 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 KLHDC7AQ5VTJ3 777 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 CLEC20AQ6ZU45 233 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 GAREM2Q75VX8 874 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 ZMIZ2Q8NF64 920 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 SHKBP1Q8TBC3 707 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 ING5Q8WYH8 240 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 SHC3Q92529 594 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 DNAJC12Q9UKB3 198 aa21.51■■□□□ 1.03
PTCD3-220ENST00000627371 MAGED2Q9UNF1 606 aaPredicted RBP21.51■■□□□ 1.03
PTCD3-220ENST00000627371 A0A1W2PRU2 124 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 BEST1O76090 585 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 LAMP2P13473 410 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 KRT5P13647 590 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 NPR3P17342 541 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 CDC25CP30307 473 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 MAP3K7CLP57077 242 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 ERGIC2Q96RQ1 377 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 TTLL2Q9BWV7 592 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 DUSP16Q9BY84 665 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 CD320Q9NPF0 282 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 EHD2Q9NZN4 543 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 SIK3Q9Y2K2 1263 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 FHOD1Q9Y613 1164 aa21.5■■□□□ 1.03
PTCD3-220ENST00000627371 O00370 1275 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 UCHL3P15374 230 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 GJA1P17302 382 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 KLK7P49862 253 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 SYCP1Q15431 976 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 FILIP1LQ4L180 1135 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 NUP93Q8N1F7 819 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 GCNAQ96QF7 691 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 NAA15Q9BXJ9 866 aaKnown RBP21.49■■□□□ 1.03
PTCD3-220ENST00000627371 GANQ9H2C0 597 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 PNPLA8Q9NP80 782 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 RTN4Q9NQC3 1192 aaKnown RBP21.49■■□□□ 1.03
PTCD3-220ENST00000627371 GDE1Q9NZC3 331 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 TSPAN16Q9UKR8 245 aa21.49■■□□□ 1.03
PTCD3-220ENST00000627371 TNFRSF10BO14763 440 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 F11P03951 625 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 SLC5A3P53794 718 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 USP46P62068 366 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 STILQ15468 1287 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 TEAD2Q15562 447 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 GOLGA7BQ2TAP0 167 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 TMEM150AQ86TG1 271 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 ANKRD52Q8NB46 1076 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 TFAP2BQ92481 460 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 COL25A1Q9BXS0 654 aaPredicted RBP21.48■■□□□ 1.03
PTCD3-220ENST00000627371 ATXN3LQ9H3M9 355 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 DAAM1Q9Y4D1 1078 aa21.48■■□□□ 1.03
PTCD3-220ENST00000627371 A0A1B0GTH6 734 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 TADA3O75528 432 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 RTN3O95197 1032 aaPredicted RBP21.47■■□□□ 1.03
PTCD3-220ENST00000627371 SERPINC1P01008 464 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 BRD2P25440 801 aaKnown RBP21.47■■□□□ 1.03
PTCD3-220ENST00000627371 BCAT1P54687 386 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 RAPGEF1Q13905 1077 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 POTEHQ6S545 545 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 LCLAT1Q6UWP7 414 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 TTC30AQ86WT1 665 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 MCRS1Q96EZ8 462 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 ZSWIM1Q9BR11 485 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 GPR88Q9GZN0 384 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 FAM207AQ9NSI2 230 aaPredicted RBP21.47■■□□□ 1.03
PTCD3-220ENST00000627371 COMMD8Q9NX08 183 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 HESX1Q9UBX0 185 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.47■■□□□ 1.03
PTCD3-220ENST00000627371 BDP1A6H8Y1 2624 aa21.47■■□□□ 1.03
PTCD3-220ENST00000627371 HELZP42694 1942 aaKnown RBP21.47■■□□□ 1.03
PTCD3-220ENST00000627371 HHLA1C9JL84 531 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 FOXN3O00409 490 aaPredicted RBP21.46■■□□□ 1.03
PTCD3-220ENST00000627371 TEX33O43247 280 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 GNA15P30679 374 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 USP8P40818 1118 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 SLC8A3P57103 927 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 FANCCQ00597 558 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 DRAP1Q14919 205 aaPredicted RBP21.46■■□□□ 1.03
PTCD3-220ENST00000627371 CNGA2Q16280 664 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 ARHGAP15Q53QZ3 475 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 RNF135Q8IUD6 432 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 PCMTD1Q96MG8 357 aaPredicted RBP21.46■■□□□ 1.03
PTCD3-220ENST00000627371 NAP1L5Q96NT1 182 aaPredicted RBP21.46■■□□□ 1.03
PTCD3-220ENST00000627371 STK33Q9BYT3 514 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 IL37Q9NZH6 218 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 LIMD1Q9UGP4 676 aa21.46■■□□□ 1.03
PTCD3-220ENST00000627371 EPHB6O15197 1021 aa21.45■■□□□ 1.02
PTCD3-220ENST00000627371 CALCAP01258 141 aa21.45■■□□□ 1.02
PTCD3-220ENST00000627371 DDX6P26196 483 aaKnown RBP eCLIP21.45■■□□□ 1.02
PTCD3-220ENST00000627371 YWHAQP27348 245 aa21.45■■□□□ 1.02
PTCD3-220ENST00000627371 CYP4F8P98187 520 aa21.45■■□□□ 1.02
PTCD3-220ENST00000627371 BST2Q10589 180 aaKnown RBP21.45■■□□□ 1.02
PTCD3-220ENST00000627371 IFRD2Q12894 506 aaPredicted RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms