RNA–Protein interactions for RNA: ENST00000530546.5

USP35-207, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 2,986 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-207ENST00000530546 ACADSP16219 412 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 RAD23BP54727 409 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 PSMC1P62191 440 aaKnown RBP12.13□□□□□ -0.47
USP35-207ENST00000530546 YWHAEP62258 255 aaKnown RBP12.13□□□□□ -0.47
USP35-207ENST00000530546 TNFAIP2Q03169 654 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 KLC1Q07866 573 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 NFX1Q12986 1120 aaKnown RBP12.13□□□□□ -0.47
USP35-207ENST00000530546 ACVR2BQ13705 512 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 PPP1R15BQ5SWA1 713 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 JOSD2Q8TAC2 188 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 NPLOC4Q8TAT6 608 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 LENG1Q96BZ8 264 aaPredicted RBP12.13□□□□□ -0.47
USP35-207ENST00000530546 PRMT1Q99873 361 aaKnown RBP12.13□□□□□ -0.47
USP35-207ENST00000530546 ELOVL4Q9GZR5 314 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 CXCL16Q9H2A7 254 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 ZWILCHQ9H900 591 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 RXFP1Q9HBX9 757 aa12.13□□□□□ -0.47
USP35-207ENST00000530546 GBA2Q9HCG7 927 aaPredicted RBP12.13□□□□□ -0.47
USP35-207ENST00000530546 A8MUI8 341 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ADCY6O43306 1168 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 TSPAN1O60635 241 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 GAS8O95995 478 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 SETSIPP0DME0 302 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 IMPDH2P12268 514 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ATF2P15336 505 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 CALB2P22676 271 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 RFC1P35251 1148 aaPredicted RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 PCK1P35558 622 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 CHKAP35790 457 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 PSMC4P43686 418 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 TMEM132DQ14C87 1099 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 SMTNL2Q2TAL5 461 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 LRRC23Q53EV4 343 aaPredicted RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 TRIM68Q6AZZ1 485 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ZNF365Q70YC5 407 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 TRIM74Q86UV6 250 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 TRIM73Q86UV7 250 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 LINC01465Q8N7H1 131 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 EXD1Q8NHP7 514 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 UBA3Q8TBC4 463 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 HPDLQ96IR7 371 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 RBM41Q96IZ5 413 aaKnown RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 HEXIM2Q96MH2 286 aaKnown RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 PTPN18Q99952 460 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 RNPEPL1Q9HAU8 725 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP35-207ENST00000530546 CPA4Q9UI42 421 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 STK38LQ9Y2H1 464 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 CELF2O95319 508 aaKnown RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 ACSL3O95573 720 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 PYGLP06737 847 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 MMP3P08254 477 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 PSMA2P25787 234 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 CETN2P41208 172 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ITGA8P53708 1063 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 KLF1Q13351 362 aaPredicted RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 TSNAXIP1Q2TAA8 658 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 C6orf118Q5T5N4 469 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 PPP1R2P3Q6NXS1 205 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 PLEKHH3Q7Z736 793 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ATL2Q8NHH9 583 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 KIF12Q96FN5 646 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ACAP3Q96P50 834 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 CPXM1Q96SM3 734 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 TINF2Q9BSI4 451 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 DDX23Q9BUQ8 820 aaKnown RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 M0QYV0 167 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 RGS16O15492 202 aaPredicted RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 KRT3P12035 628 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 EIF4BP23588 611 aaKnown RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 DYNLT1P63172 113 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 PARP6Q2NL67 630 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 KCNT1Q5JUK3 1230 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 MARCH8Q5T0T0 291 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 SLC4A11Q8NBS3 891 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 CFAP61Q8NHU2 1237 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 EPS8L3Q8TE67 593 aaKnown RBP12.12□□□□□ -0.47
USP35-207ENST00000530546 GRK7Q8WTQ7 553 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ADPGKQ9BRR6 497 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 APOL6Q9BWW8 343 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 NFKBIZQ9BYH8 718 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 PCDHGC3Q9UN70 934 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 ARL2BPQ9Y2Y0 163 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 HES2Q9Y543 173 aa12.12□□□□□ -0.47
USP35-207ENST00000530546 TCRBV5S1A1TA0A578 114 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 RBM47A0AV96 593 aaKnown RBP12.11□□□□□ -0.47
USP35-207ENST00000530546 MED7O43513 233 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 GSTA2P09210 222 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 PTPN11Q06124 597 aaPredicted RBP12.11□□□□□ -0.47
USP35-207ENST00000530546 FAM187BQ17R55 369 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 DUSP28Q4G0W2 176 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 TAOK1Q7L7X3 1001 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 ANKRD23Q86SG2 305 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 SNF8Q96H20 258 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 SLITRK1Q96PX8 696 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 BCO2Q9BYV7 579 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 METTL5Q9NRN9 209 aaKnown RBP12.11□□□□□ -0.47
USP35-207ENST00000530546 DPP3Q9NY33 737 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 LMCD1Q9NZU5 365 aa12.11□□□□□ -0.47
USP35-207ENST00000530546 MORF4L1Q9UBU8 362 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms