RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ZNF527Q8NB42 609 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 CHST14Q8NCH0 376 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 NSUN7Q8NE18 718 aaKnown RBP4.91□□□□□ -1.62
SF3B1-202ENST00000409915 ZNF483Q8TF39 744 aaPredicted RBP4.91□□□□□ -1.62
SF3B1-202ENST00000409915 PPP1R13LQ8WUF5 828 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 UCMAQ8WVF2 138 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 TCP11Q8WWU5 503 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 ASB12Q8WXK4 309 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 LRTOMTQ8WZ04 291 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 C1GALT1C1Q96EU7 318 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 NSUN5Q96P11 429 aaKnown RBP4.91□□□□□ -1.62
SF3B1-202ENST00000409915 UIMC1Q96RL1 719 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 ANO3Q9BYT9 981 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 WDR11Q9BZH6 1224 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 ZCCHC2Q9C0B9 1178 aaKnown RBP4.91□□□□□ -1.62
SF3B1-202ENST00000409915 SENP6Q9GZR1 1112 aaPredicted RBP4.91□□□□□ -1.62
SF3B1-202ENST00000409915 FAM107BQ9H098 131 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 C11orf49Q9H6J7 331 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 BCAS3Q9H6U6 928 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 IRAK4Q9NWZ3 460 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 CHCHD3Q9NX63 227 aaKnown RBP4.91□□□□□ -1.62
SF3B1-202ENST00000409915 NSMCE4AQ9NXX6 385 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 CEP72Q9P209 647 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 FAM184BQ9ULE4 1060 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 L1RE1Q9UN81 338 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 KCNJ14Q9UNX9 436 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 AKT3Q9Y243 479 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 COQ6Q9Y2Z9 468 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 PCDHA8Q9Y5H6 950 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 FRMPD4Q14CM0 1322 aa4.91□□□□□ -1.62
SF3B1-202ENST00000409915 A0A1W2PQ45 241 aaPredicted RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 A0A1W2PQY0 241 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 SPDYE3A6NKU9 549 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 EIF3CLB5ME19 914 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 TISP43B9A030 160 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 B9A039 149 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 DNM1LO00429 736 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 IRAK2O43187 625 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 DYNC1LI2O43237 492 aaPredicted RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 DKC1O60832 514 aaKnown RBP eCLIP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 DUSP11O75319 330 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 PPM1BO75688 479 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 CDKL5O76039 1030 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 DEXIO95424 95 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 F11P03951 625 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 SNRPB2P08579 225 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 TXNP10599 105 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 FDPSP14324 419 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 GCFC2P16383 781 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 NAT1P18440 290 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 C5AR1P21730 350 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 UBA1P22314 1058 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 MSX1P28360 303 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 CCND2P30279 289 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 NPTX2P47972 431 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 RGS19P49795 217 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 BPIFB3P59826 476 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 DCAF7P61962 342 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 SP4Q02446 784 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 PLAURQ03405 335 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 SRSF11Q05519 484 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 NPY5RQ15761 445 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 STXBP2Q15833 593 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 FSCN1Q16658 493 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 LRRC26Q2I0M4 334 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 DUSP28Q4G0W2 176 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 HECTD3Q5T447 861 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 FAM205BPQ63HN1 556 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 NUGGCQ68CJ6 796 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 CPLX2Q6PUV4 134 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 HDXQ7Z353 690 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 TRIM74Q86UV6 250 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 TRIM73Q86UV7 250 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 REXO1L1PQ8IX06 675 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 SYTL1Q8IYJ3 562 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 PHACTR4Q8IZ21 702 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 NRSN1Q8IZ57 195 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 CACNA2D3Q8IZS8 1091 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 TMEM145Q8NBT3 493 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 ADCY4Q8NFM4 1077 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 OR6J1Q8NGC5 347 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 GPBAR1Q8TDU6 330 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 SCFD2Q8WU76 684 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 LMBR1Q8WVP7 490 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 TRIM11Q96F44 468 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 SCARF2Q96GP6 870 aaPredicted RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 TMEM41AQ96HV5 264 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 RADILQ96JH8 1075 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 IWS1Q96ST2 819 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 EIF3CQ99613 913 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 ALG1Q9BT22 464 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 UPF3AQ9H1J1 476 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 STARD7Q9NQZ5 370 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 HOMER3Q9NSC5 361 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 OLA1Q9NTK5 396 aaKnown RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 ORC3Q9UBD5 711 aaPredicted RBP4.9□□□□□ -1.63
SF3B1-202ENST00000409915 AASSQ9UDR5 926 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 BLOC1S6Q9UL45 172 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 MAFFQ9ULX9 164 aa4.9□□□□□ -1.63
SF3B1-202ENST00000409915 PCDHA6Q9UN73 950 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms