RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ATICP31939 592 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 AVPR1AP37288 418 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 AP3M2P53677 418 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 CYP4F8P98187 520 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 SCARA3Q6AZY7 606 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 TMEM150AQ86TG1 271 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 KBTBD7Q8WVZ9 684 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 CCDC127Q96BQ5 260 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 SYT15Q9BQS2 421 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 FAM126AQ9BYI3 521 aaPredicted RBP20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 CHRDQ9H2X0 955 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 MAGEC2Q9UBF1 373 aaPredicted RBP20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 NDRG2Q9UN36 371 aaKnown RBP20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 NCANO14594 1321 aa20.42■□□□□ 0.86
CCDC28A-203ENST00000617445 SPTBN4Q9H254 2564 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 KLRC4O43908 158 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 TACC1O75410 805 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 NOL4O94818 638 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 PFKFB1P16118 471 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 CDR1P51861 262 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 KPNA1P52294 538 aaPredicted RBP20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 TRPC3Q13507 836 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 PPP2R5DQ14738 602 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 DDR2Q16832 855 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 VSTM1Q6UX27 236 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 MON1AQ86VX9 555 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 RALGPS2Q86X27 583 aaPredicted RBP20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 SLC9A9Q8IVB4 645 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 MMS19Q96T76 1030 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 SCAND2PQ9GZW5 306 aaPredicted RBP20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 KIF9Q9HAQ2 790 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 HPSEQ9Y251 543 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 PCDHGA2Q9Y5H1 932 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 R4GN57 208 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 CFAP54Q96N23 3096 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 DMDP11532 3685 aa20.41■□□□□ 0.86
CCDC28A-203ENST00000617445 A0A1B0GVL5 298 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 MYBPHLA2RUH7 354 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 CST3P01034 146 aaPredicted RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 CCNE1P24864 410 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 GNL1P36915 607 aaPredicted RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 CSTF1Q05048 431 aaKnown RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 STK4Q13043 487 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 ZNF268Q14587 947 aaPredicted RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 OTOGLQ3ZCN5 2332 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 WDR87Q6ZQQ6 2873 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 GRAMD1CQ8IYS0 662 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 ADSSL1Q8N142 457 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 FSIP1Q8NA03 581 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 CCDC47Q96A33 483 aaKnown RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 SYAP1Q96A49 352 aaPredicted RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 SPATA17Q96L03 361 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 LRRC3BQ96PB8 259 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 SNX25Q9H3E2 840 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 LMAN1LQ9HAT1 526 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 PRMT8Q9NR22 394 aaPredicted RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 TDP1Q9NUW8 608 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 EHD2Q9NZN4 543 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 MAGED2Q9UNF1 606 aaPredicted RBP20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 ZDHHC9Q9Y397 364 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 ZNF292O60281 2723 aa20.4■□□□□ 0.86
CCDC28A-203ENST00000617445 OBSL1O75147 1896 aa20.39■□□□□ 0.86
CCDC28A-203ENST00000617445 FAM237AA0A1B0GTK4 181 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 SLC38A8A6NNN8 435 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 PDXKO00764 312 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 KINO60870 393 aaKnown RBP20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 KIF20AO95235 890 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 PRAMEF12O95522 483 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 LMO2P25791 158 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 SYKP43405 635 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 GPR15P49685 360 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 TNNC1P63316 161 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 CLDN10P78369 228 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 LRRC32Q14392 662 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 WDR72Q3MJ13 1102 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 KMT5BQ4FZB7 885 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 GPIHBP1Q8IV16 184 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 MAB21L3Q8N8X9 362 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 ATRIPQ8WXE1 791 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 DMAC2Q9NW81 257 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 ZSCAN32Q9NX65 697 aa20.39■□□□□ 0.85
CCDC28A-203ENST00000617445 PHACTR2O75167 634 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 PDGFRBP09619 1106 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 CHRNB1P11230 501 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 NRLP54845 237 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 MTAPQ13126 283 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 ITPRIPL2Q3MIP1 535 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 DGKKQ5KSL6 1271 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 SCN4BQ8IWT1 228 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 KIAA0895Q8NCT3 520 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 MYCBPAPQ8TBZ2 947 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 ZNF516Q92618 1163 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 NELL1Q92832 810 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 VRTNQ9H8Y1 702 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 CRTAC1Q9NQ79 661 aa20.38■□□□□ 0.85
CCDC28A-203ENST00000617445 GREB1Q4ZG55 1949 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 A0A1W2PQ27 194 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 A0A1W2PQ64 194 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 A0A1W2PQD8 194 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms