RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 SPP2Q13103 211 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 BYSLQ13895 437 aaKnown RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 GATAD2AQ86YP4 633 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 EPHX4Q8IUS5 362 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 DTX3LQ8TDB6 740 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 TDRD3Q9H7E2 651 aaKnown RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 FBXO10Q9UK96 956 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 EMSYQ7Z589 1322 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 MAGEB2O15479 319 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 MTSS1O43312 755 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 DGAT1O75907 488 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 ZMYND11Q15326 602 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 MGAT5BQ3V5L5 792 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 GALNT4Q8N4A0 578 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 TRIM43BA6NCK2 446 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 CFAP99D6REC4 459 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 TRIM3O75382 744 aaPredicted RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 TCN1P20061 433 aaPredicted RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 CYP24A1Q07973 514 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 POTEAQ6S8J7 498 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 CDH24Q86UP0 819 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 SCFD2Q8WU76 684 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 CDH16O75309 829 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 ENO1P06733 434 aaKnown RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 DDX39BQ13838 428 aaKnown RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 TYW3Q6IPR3 259 aaKnown RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 LPAR1Q92633 364 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 SLC38A7Q9NVC3 462 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 SNX4O95219 450 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 PGM3O95394 542 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 PDHA2P29803 388 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 POTEGQ6S5H5 508 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 NACC2Q96BF6 587 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 VAV3Q9UKW4 847 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 ITIH6Q6UXX5 1313 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 CAND2O75155 1236 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 CD4P01730 458 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 S100A9P06702 114 aaKnown RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 HSMCR30P0CW71 290 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 TKFCQ3LXA3 575 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 SEPT12Q8IYM1 358 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 LY9Q9HBG7 655 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 SAE1Q9UBE0 346 aaPredicted RBP12.53□□□□□ -0.4
PCF11-201ENST00000298281 KLHL20Q9Y2M5 609 aa12.53□□□□□ -0.4
PCF11-201ENST00000298281 DSG3P32926 999 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 SNRPFP62306 86 aaKnown RBP12.52□□□□□ -0.4
PCF11-201ENST00000298281 SCRN3Q0VDG4 424 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 QRICH1Q2TAL8 776 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 ARMCX4Q5H9R4 360 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 FMR1NBQ8N0W7 255 aaPredicted RBP12.52□□□□□ -0.4
PCF11-201ENST00000298281 PNMA5Q96PV4 448 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 ARHGEF38Q9NXL2 777 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 KCNN4O15554 427 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 CLTBP09497 229 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 E2F4Q16254 413 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 HLA-DQA1Q5Y7H0 255 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 SETD3Q86TU7 594 aaPredicted RBP12.52□□□□□ -0.4
PCF11-201ENST00000298281 ADGRF4Q8IZF3 695 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 AGPAT1Q99943 283 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 ARMC7Q9H6L4 198 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 MAFFQ9ULX9 164 aa12.52□□□□□ -0.4
PCF11-201ENST00000298281 TRIM64BA6NI03 449 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 SULT1E1P49888 294 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 ATP2C1P98194 919 aaPredicted RBP12.52□□□□□ -0.41
PCF11-201ENST00000298281 EDRF1Q3B7T1 1238 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 FUT11Q495W5 492 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 XKR3Q5GH77 459 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 NEK7Q8TDX7 302 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 OR6A2O95222 327 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 AGTP01019 485 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 ACADSBP45954 432 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 HARS2P49590 506 aaKnown RBP12.52□□□□□ -0.41
PCF11-201ENST00000298281 PTPN21Q16825 1174 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 PACS1Q6VY07 963 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 TRPM8Q7Z2W7 1104 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 SGMS1Q86VZ5 419 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 NEDD1Q8NHV4 660 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 RSPH1Q8WYR4 309 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 EME1Q96AY2 570 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 KCNK16Q96T55 309 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 TRIT1Q9H3H1 467 aaKnown RBP12.52□□□□□ -0.41
PCF11-201ENST00000298281 SRP68Q9UHB9 627 aaKnown RBP12.52□□□□□ -0.41
PCF11-201ENST00000298281 TRIM49BA6NDI0 452 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 SV2CQ496J9 727 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 DGKKQ5KSL6 1271 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 ATPAF2Q8N5M1 289 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 OR6J1Q8NGC5 347 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 GAL3ST3Q96A11 431 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 PABPC5Q96DU9 382 aaKnown RBP12.52□□□□□ -0.41
PCF11-201ENST00000298281 FAR2Q96K12 515 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 RNPC3Q96LT9 517 aaKnown RBP12.52□□□□□ -0.41
PCF11-201ENST00000298281 DDX47Q9H0S4 455 aaKnown RBP12.52□□□□□ -0.41
PCF11-201ENST00000298281 VPS9D1Q9Y2B5 631 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 IPPQ9Y573 584 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 AP1G2O75843 785 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 SGSM1Q2NKQ1 1148 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 KLHL1Q9NR64 748 aa12.52□□□□□ -0.41
PCF11-201ENST00000298281 C20orf96Q9NUD7 363 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms