RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 TRMT5Q32P41 509 aaKnown RBP17.12■□□□□ 0.33
SH3RF1-201ENST00000284637 CBWD2Q8IUF1 395 aa17.12■□□□□ 0.33
SH3RF1-201ENST00000284637 IPMKQ8NFU5 416 aa17.12■□□□□ 0.33
SH3RF1-201ENST00000284637 NT5C1AQ9BXI3 368 aa17.12■□□□□ 0.33
SH3RF1-201ENST00000284637 IQSEC2Q5JU85 1478 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 F8VZ95 297 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 FAM153BP0C7A2 387 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 FAM153CQ494X1 144 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 SEZ6Q53EL9 994 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 LRRC8BQ6P9F7 803 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 TSPAN17Q96FV3 270 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 FAM153AQ9UHL3 310 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 ADRA2BP18089 450 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 CCNHP51946 323 aaPredicted RBP17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 SLC25A41Q8N5S1 370 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 BLOC1S6Q9UL45 172 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 M0R3G1 203 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 TBC1D4O60343 1298 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 DEFA1P59665 94 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 DEFA3P59666 94 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 ZNF844Q08AG5 666 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 DCAF6Q58WW2 860 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 TSEN2Q8NCE0 465 aaKnown RBP17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 SHCBP1Q8NEM2 672 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 MED15Q96RN5 788 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 PRPF18Q99633 342 aaKnown RBP17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 KLHL4Q9C0H6 718 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 SFMBT1Q9UHJ3 866 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 AP3B1O00203 1094 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 GYS1P13807 737 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 RGS2P41220 211 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 PDK1Q15118 436 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 LRRC74BQ6ZQY2 392 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 RRM2BQ7LG56 351 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 PIM2Q9P1W9 311 aa17.11■□□□□ 0.33
SH3RF1-201ENST00000284637 CROCC2H7BZ55 1655 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 NTRK3Q16288 839 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 LRRC71Q8N4P6 559 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 OTULINQ96BN8 352 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 GPRC5CQ9NQ84 441 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 WHRNQ9P202 907 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 TJP2Q9UDY2 1190 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 TBX20Q9UMR3 447 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 IGSF9BQ9UPX0 1349 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 ABLIM1O14639 778 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 HSPA1AP0DMV8 641 aaKnown RBP17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 HSPA1BP0DMV9 641 aaKnown RBP17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 PTGER2P43116 358 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 KYAT1Q16773 422 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 TTC33Q6PID6 262 aaPredicted RBP17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 SETD3Q86TU7 594 aaPredicted RBP17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 KRT35Q92764 455 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 MYBL2P10244 700 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 SERPINB5P36952 375 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 COG2Q14746 738 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 TRIM60Q495X7 471 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 PATL1Q86TB9 770 aaKnown RBP17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 SLC20A1Q8WUM9 679 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 SEPT1Q8WYJ6 367 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 AGBL1Q96MI9 1066 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 CBWD1Q9BRT8 395 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 TEX13BQ9BXU2 312 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 VPS33BQ9H267 617 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 CYP39A1Q9NYL5 469 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 AKAP3O75969 853 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 FKBP9O95302 570 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 CYP11B1P15538 503 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 FKBP9P1Q75LS8 142 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 PRCCQ92733 491 aaPredicted RBP17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 FAM205AQ6ZU69 1335 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 ADGRA2Q96PE1 1338 aa17.1■□□□□ 0.33
SH3RF1-201ENST00000284637 CPB1P15086 417 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 RRM1P23921 792 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 YY1P25490 414 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 GRIK1P39086 918 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 MAP3K10Q02779 954 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 CUL2Q13617 745 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 NANOGNBQ7Z5D8 188 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 CD302Q8IX05 232 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 CCDC33Q8N5R6 958 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 ZNF184Q99676 751 aaPredicted RBP17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 DDX18Q9NVP1 670 aaKnown RBP17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 ZNF212Q9UDV6 495 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 COMMD3-BMI1R4GMX3 469 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 PSTPIP1O43586 416 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 STIP1P31948 543 aaKnown RBP17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 SLC7A14Q8TBB6 771 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 ZNF197O14709 1029 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 NDUFS3O75489 264 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 EIF2B2P49770 351 aaKnown RBP17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 AQP5P55064 265 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 ZNF786Q8N393 782 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 SALL3Q9BXA9 1300 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 KLRK1P26718 216 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 S100A5P33763 92 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 MLH1P40692 756 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 ORC1Q13415 861 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 C16orf72Q14CZ0 275 aa17.09■□□□□ 0.33
SH3RF1-201ENST00000284637 ATF7IP2Q5U623 682 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms