RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 PDGFRBP09619 1106 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 EPHB3P54753 998 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 CDH8P55286 799 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 TWF1Q12792 350 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 IQCEQ6IPM2 695 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 SPATA2LQ8IUW3 424 aaPredicted RBP27.5■■□□□ 1.99
TRIM28-204ENST00000594806 LEMD2Q8NC56 503 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 MYCBPAPQ8TBZ2 947 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 ABI2Q9NYB9 513 aaPredicted RBP27.5■■□□□ 1.99
TRIM28-204ENST00000594806 CDH22Q9UJ99 828 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 DOCK6Q96HP0 2047 aa27.5■■□□□ 1.99
TRIM28-204ENST00000594806 HAPLN1P10915 354 aaPredicted RBP27.49■■□□□ 1.99
TRIM28-204ENST00000594806 PTPN1P18031 435 aaKnown RBP27.49■■□□□ 1.99
TRIM28-204ENST00000594806 INCA1Q0VD86 236 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 MGAT5BQ3V5L5 792 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 SCARA5Q6ZMJ2 495 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 OTOP3Q7RTS5 596 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 CREBRFQ8IUR6 639 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 NAT10Q9H0A0 1025 aaKnown RBP27.49■■□□□ 1.99
TRIM28-204ENST00000594806 SDCBP2Q9H190 292 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 CRISPLD1Q9H336 500 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 TMLHEQ9NVH6 421 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 SLC27A5Q9Y2P5 690 aa27.49■■□□□ 1.99
TRIM28-204ENST00000594806 MYBPHLA2RUH7 354 aa27.48■■□□□ 1.99
TRIM28-204ENST00000594806 LOC730098B7Z3J9 87 aa27.48■■□□□ 1.99
TRIM28-204ENST00000594806 MTIF2P46199 727 aaKnown RBP27.48■■□□□ 1.99
TRIM28-204ENST00000594806 TYRO3Q06418 890 aa27.48■■□□□ 1.99
TRIM28-204ENST00000594806 GRASPQ7Z6J2 395 aaPredicted RBP27.48■■□□□ 1.99
TRIM28-204ENST00000594806 ITIH5Q86UX2 942 aa27.48■■□□□ 1.99
TRIM28-204ENST00000594806 PLCD3Q8N3E9 789 aa27.48■■□□□ 1.99
TRIM28-204ENST00000594806 ACSF2Q96CM8 615 aaPredicted RBP27.48■■□□□ 1.99
TRIM28-204ENST00000594806 CRTAC1Q9NQ79 661 aa27.48■■□□□ 1.99
TRIM28-204ENST00000594806 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP27.48■■□□□ 1.999e-8■□□□□ 9.1
TRIM28-204ENST00000594806 DNMT3BQ9UBC3 853 aaKnown RBP27.48■■□□□ 1.99
TRIM28-204ENST00000594806 HCRTO43612 131 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 MAGEA11P43364 429 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 RAP1GAPP47736 663 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 PSMC1P62191 440 aaKnown RBP27.47■■□□□ 1.99
TRIM28-204ENST00000594806 RPL10AP62906 217 aaKnown RBP27.47■■□□□ 1.99
TRIM28-204ENST00000594806 VEPH1Q14D04 833 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 PABPC1LQ4VXU2 614 aaKnown RBP27.47■■□□□ 1.99
TRIM28-204ENST00000594806 VSTM1Q6UX27 236 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 GJD3Q8N144 294 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 CRYBG2Q8N1P7 616 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 B3GALNT2Q8NCR0 500 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 FEZF2Q8TBJ5 459 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 CEP295NLQ96MC4 621 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 SEPT5Q99719 369 aaPredicted RBP27.47■■□□□ 1.99
TRIM28-204ENST00000594806 NFE2L3Q9Y4A8 694 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 NME7Q9Y5B8 376 aa27.47■■□□□ 1.99
TRIM28-204ENST00000594806 ZFP37Q9Y6Q3 630 aaPredicted RBP27.47■■□□□ 1.99
TRIM28-204ENST00000594806 ZNF197O14709 1029 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 ATP2C2O75185 946 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 FSHRP23945 695 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 TBXAS1P24557 533 aaPredicted RBP27.46■■□□□ 1.99
TRIM28-204ENST00000594806 EEF1GP26641 437 aaKnown RBP27.46■■□□□ 1.99
TRIM28-204ENST00000594806 YWHAEP62258 255 aaKnown RBP27.46■■□□□ 1.99
TRIM28-204ENST00000594806 MAN2A1Q16706 1144 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 MYLPFQ96A32 169 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 ELMO3Q96BJ8 720 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 RPGRIP1Q96KN7 1286 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 NT5C1BQ96P26 610 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 CEP72Q9P209 647 aa27.46■■□□□ 1.99
TRIM28-204ENST00000594806 NOTCH4Q99466 2003 aa27.45■■□□□ 1.99
TRIM28-204ENST00000594806 GTPBP10A4D1E9 387 aaKnown RBP27.45■■□□□ 1.98
TRIM28-204ENST00000594806 LRRN2O75325 713 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 MICAL2O94851 1124 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 NDST1P52848 882 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 CYP4A22Q5TCH4 519 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 C11orf57Q6ZUT1 292 aaPredicted RBP27.45■■□□□ 1.98
TRIM28-204ENST00000594806 ZDHHC14Q8IZN3 488 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 TTC9BQ8N6N2 239 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 TDRD5Q8NAT2 981 aaKnown RBP27.45■■□□□ 1.98
TRIM28-204ENST00000594806 EHBP1Q8NDI1 1231 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 TATDN2Q93075 761 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 PSMG2Q969U7 264 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 PCED1BQ96HM7 432 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 NT5C1AQ9BXI3 368 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27.45■■□□□ 1.988e-8■■■■□ 22.3
TRIM28-204ENST00000594806 PTPRDP23468 1912 aa27.45■■□□□ 1.98
TRIM28-204ENST00000594806 FGF19O95750 216 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 RHOP08100 348 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 SSTR3P32745 418 aaPredicted RBP27.44■■□□□ 1.98
TRIM28-204ENST00000594806 EPHA5P54756 1037 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 MYL5Q02045 173 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 MDH1BQ5I0G3 518 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 LMO3Q8TAP4 145 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 CORO1BQ9BR76 489 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 COL25A1Q9BXS0 654 aaPredicted RBP27.44■■□□□ 1.98
TRIM28-204ENST00000594806 DNAJC25Q9H1X3 360 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 DPEP3Q9H4B8 488 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 ASAH2Q9NR71 780 aa27.44■■□□□ 1.98
TRIM28-204ENST00000594806 ATP8B3O60423 1300 aa27.43■■□□□ 1.98
TRIM28-204ENST00000594806 KCNJ18B7U540 433 aa27.43■■□□□ 1.98
TRIM28-204ENST00000594806 CILPO75339 1184 aa27.43■■□□□ 1.98
TRIM28-204ENST00000594806 CYP2F1P24903 491 aa27.43■■□□□ 1.98
TRIM28-204ENST00000594806 CYP27A1Q02318 531 aa27.43■■□□□ 1.98
TRIM28-204ENST00000594806 CUL2Q13617 745 aa27.43■■□□□ 1.98
TRIM28-204ENST00000594806 KCNJ12Q14500 433 aa27.43■■□□□ 1.98
TRIM28-204ENST00000594806 TCP11X2Q5H9J9 407 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms